Rh1BG016000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000499
Physical Location & Seq
Forward (+)
2507631 .. 2509158
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG016000.1

Sequence Viewer

Length: 669 bp
ATGGTAACTTGGACTGAGATTGCACGAACAGATGGTGATGGTGGTGGTGGCATTCATGAAATTAACTGTTCTTTTCACGAGCAAAATCTACACGCAGCTTCGGACTCTCAATTAGGGGCAGGATGTCAAGCAGGGGCAAGGTTTCGAATCTTAAAGAAAAGATTATTAAATGCCAAGACGAAACGCTGCAGCTATTGCAGGAGAAATAGATGTGGTTTGAATTGGACAGAAGCTGACCTGAGAAGACAAAAACTATGCAATTCGATCCAACCATCTAAATTTGAAAAGGAACTCGAGGATCTGAAGAAGGCCTTGAAGAATGAGGAGGAGAATGAATCCGTGATAAAAGAGATTTTTGACCGTAGGCAAGTTAGCTATGCTGAATATAAGAAATCTATGGATTTACAGCTGATAAAAATTGAGCGAAACTTAGTTGAGCTAGAGGAGATCGTGTCTGATGAGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTAAAAAATCTTGATGTCTTCTGTGCGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGCTTGATCATCCTGTTGGACAGAATGGACAGAAAATGCGAAGAAGGCGAGTCTCGAAGAAGTCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.57

Weight (kDa)

9.23

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 536
AclWI GGATC 2 cut(s) 259, 306
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 323
AgsI TTSAA 3 cut(s) 220, 284, 316
AluBI AGCT 8 cut(s) 98, 192, 233, 375, 409, 439, 596, 601
AluI AGCT 8 cut(s) 98, 192, 233, 375, 409, 439, 596, 601
Alw26I GTCTC 3 cut(s) 502, 583, 655
AlwI GGATC 2 cut(s) 259, 306
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 95, 186, 189
ApoI RAATTY 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 293
BauI CACGAG 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 250, 520
BbvI GCAGC 3 cut(s) 107, 173, 201
BccI CCATC 4 cut(s) 26, 32, 280, 493
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 3 cut(s) 502, 583, 655
BfaI CTAG 2 cut(s) 440, 570
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 4 cut(s) 96, 187, 190, 537
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 4 cut(s) 97, 188, 191, 538
BmeT110I CYCGRG 1 cut(s) 293
BpiI GAAGAC 2 cut(s) 250, 520
Bpu1102I GCTNAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
BseGI GGATG 2 cut(s) 128, 607
BseMII CTCAG 2 cut(s) 6, 230
BseRI GAGGAG 3 cut(s) 338, 341, 458
BseXI GCAGC 3 cut(s) 107, 173, 201
BshFI GGCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 293
BsmAI GTCTC 3 cut(s) 502, 583, 655
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 264, 298, 447, 604
Bsp1720I GCTNAGC 1 cut(s) 597
BspACI CCGC 1 cut(s) 536
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 7, 231
BspHI TCATGA 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 191
BspPI GGATC 2 cut(s) 259, 306
BspT104I TTCGAA 1 cut(s) 145
BssMI GATC 4 cut(s) 264, 298, 447, 604
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 68, 362, 480
Bst6I CTCTTC 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 145
BstDEI CTNAG 4 cut(s) 15, 239, 430, 597
BstF5I GGATG 2 cut(s) 128, 607
BstKTI GATC 4 cut(s) 267, 301, 450, 607
BstMAI GTCTC 3 cut(s) 502, 583, 655
BstMBI GATC 4 cut(s) 264, 298, 447, 604
BstMWI GCNNNNNNNGC 3 cut(s) 195, 489, 643
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 3 cut(s) 107, 173, 201
BstV2I GAAGAC 2 cut(s) 250, 520
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 2 cut(s) 128, 607
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 55
CseI GACGC 1 cut(s) 498
CviAII CATG 1 cut(s) 56
DdeI CTNAG 4 cut(s) 15, 239, 430, 597
DpnI GATC 4 cut(s) 266, 300, 449, 606
DpnII GATC 4 cut(s) 264, 298, 447, 604
Eam1104I CTCTTC 1 cut(s) 500
EarI CTCTTC 1 cut(s) 500
Eco147I AGGCCT 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 293
FaeI CATG 1 cut(s) 59
FaiI YATR 7 cut(s) 57, 256, 378, 387, 398, 494, 542
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 585, 617
FatI CATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 96, 187, 190, 537
FokI GGATG 2 cut(s) 135, 594
Fsp4HI GCNGC 4 cut(s) 96, 187, 190, 537
FspBI CTAG 2 cut(s) 440, 570
GluI GCNGC 4 cut(s) 96, 187, 190, 537
HaeIII GGCC 1 cut(s) 311
HgaI GACGC 1 cut(s) 498
Hin1II CATG 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 8 cut(s) 104, 147, 335, 461, 468, 557, 566, 648
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 103, 303, 457
Hpy188III TCNNGA 7 cut(s) 56, 77, 465, 521, 554, 652, 663
HpyAV CCTTC 4 cut(s) 301, 556, 593, 636
HpyCH4III ACNGT 3 cut(s) 68, 362, 480
HpyCH4V TGCA 5 cut(s) 23, 189, 198, 258, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 489, 643
HpyF3I CTNAG 4 cut(s) 15, 239, 430, 597
Hsp92II CATG 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 4 cut(s) 264, 298, 447, 604
LpnPI CCDG 6 cut(s) 105, 117, 184, 251, 450, 624
Lsp1109I GCAGC 3 cut(s) 107, 173, 201
MaeI CTAG 2 cut(s) 440, 570
MaeIII GTNAC 1 cut(s) 4
MalI GATC 4 cut(s) 266, 300, 449, 606
MboI GATC 4 cut(s) 264, 298, 447, 604
MboII GAAGA 7 cut(s) 255, 316, 328, 517, 520, 651, 667
MflI RGATCY 1 cut(s) 298
MluCI AATT 6 cut(s) 60, 110, 220, 259, 278, 417
MlyI GAGTC 5 cut(s) 98, 470, 477, 575, 657
MmeI TCCRAC 2 cut(s) 292, 595
MnlI CCTC 4 cut(s) 289, 316, 319, 436
MseI TTAA 3 cut(s) 63, 152, 167
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 195, 489, 643
NdeII GATC 4 cut(s) 264, 298, 447, 604
NlaIII CATG 1 cut(s) 59
NspV TTCGAA 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 311
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 147, 335, 557
PkrI GCNGC 4 cut(s) 97, 188, 191, 538
PleI GAGTC 5 cut(s) 98, 469, 476, 574, 656
PpsI GAGTC 5 cut(s) 98, 469, 476, 574, 656
PspXI VCTCGAGB 1 cut(s) 293
PstI CTGCAG 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 3 cut(s) 63, 152, 167
SatI GCNGC 4 cut(s) 96, 187, 190, 537
Sau3AI GATC 4 cut(s) 264, 298, 447, 604
SchI GAGTC 5 cut(s) 98, 470, 477, 575, 657
SfcI CTRYAG 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 6 cut(s) 60, 110, 220, 259, 278, 417
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 1 cut(s) 536
SspMI CTAG 2 cut(s) 440, 570
StuI AGGCCT 1 cut(s) 311
TaaI ACNGT 3 cut(s) 68, 362, 480
TaqI TCGA 7 cut(s) 145, 263, 294, 555, 560, 653, 664
TasI AATT 6 cut(s) 60, 110, 220, 259, 278, 417
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 147, 335, 557
Tru1I TTAA 3 cut(s) 63, 152, 167
Tru9I TTAA 3 cut(s) 63, 152, 167
TseI GCWGC 3 cut(s) 95, 186, 189
TspDTI ATGAA 4 cut(s) 44, 72, 348, 489
TspGWI ACGGA 1 cut(s) 328
XapI RAATTY 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 2 cut(s) 440, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.