RLG00000030640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000499
Physical Location & Seq
Forward (+)
64826955 .. 64936857
109903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030640

Sequence Viewer

Length: 840 bp
ATGCACTTCGGTTTTGAATCTGGAATTTTTTTTTTTGAAAACCCAAACCATCCTAGCCCTAGCCCAATTATATCTGTTAGCTTTACTTGCTCACGACGGACACTTGGGACTCCTCCCTCCCTCCCTCTGACAACCACCCATCGATCCCAAACACTCCTCACCGCGGCCACCACCTCTAACCCGACCCGGTCCCGAATCCCAGTAATCTTGTTCCGGATTCAGCTGATAGACGCCAAGAACTGGGCTTCAAGTCCCATCCGGGTGTGCGACCGACAACGAGGTAGGGGCAGGATGTCAAGCAGGAACGAAGAAGTTTTGAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAACGCTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTCTGGAACAGACAAAAGAAAGAGCTGTAGCTGAGTTGACAAGACAATCGACCGAAACATCTGAATTTGAGAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTAAGGAGAGGTCTGAAACCAATCTAAAAGATATTTTTGACGCGATGCAAGCTTCGCATGAGAAATATAGGAAAGCTATGGAAAAAGAGCAGATAGAAGGAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGTGATGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAACGGTGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGATGGACAGAATGGACCCAAAATGCGAAAAAGGAGAGGGTCGAAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

32.1

Weight (kDa)

9.56

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccII CGCG 3 cut(s) 164, 551, 663
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 3 cut(s) 162, 164, 361
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 2 cut(s) 24, 467
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 494, 616
AfiI CCNNNNNNNGG 2 cut(s) 163, 240
AgsI TTSAA 6 cut(s) 17, 38, 249, 319, 341, 505
AluBI AGCT 9 cut(s) 81, 223, 322, 428, 434, 560, 584, 767, 772
AluI AGCT 9 cut(s) 81, 223, 322, 428, 434, 560, 584, 767, 772
Alw26I GTCTC 2 cut(s) 673, 754
AlwI GGATC 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 3 cut(s) 165, 386, 498
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 2 cut(s) 24, 467
AspS9I GGNCC 2 cut(s) 189, 797
AsuC2I CCSGG 2 cut(s) 187, 260
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 2 cut(s) 189, 797
BbvI GCAGC 1 cut(s) 345
BccI CCATC 5 cut(s) 57, 147, 263, 664, 779
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 2 cut(s) 187, 260
BcoDI GTCTC 2 cut(s) 673, 754
BfaI CTAG 4 cut(s) 54, 60, 653, 683
BfmI CTRYAG 2 cut(s) 429, 627
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 3 cut(s) 165, 359, 362
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 3 cut(s) 166, 360, 363
Bme1390I CCNGG 2 cut(s) 187, 260
Bme18I GGWCC 2 cut(s) 189, 797
BmgT120I GGNCC 2 cut(s) 189, 797
BmiI GGNNCC 2 cut(s) 191, 799
BmrFI CCNGG 2 cut(s) 187, 260
BmrI ACTGGG 2 cut(s) 194, 250
BmsI GCATC 2 cut(s) 543, 639
BmuI ACTGGG 2 cut(s) 194, 250
Bpu1102I GCTNAGC 1 cut(s) 768
BpuMI CCSGG 2 cut(s) 187, 260
Bsa29I ATCGAT 2 cut(s) 142, 486
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 240
Bse1I ACTGG 2 cut(s) 200, 245
BseAI TCCGGA 1 cut(s) 213
BseCI ATCGAT 2 cut(s) 142, 486
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 4 cut(s) 49, 255, 297, 778
BseLI CCNNNNNNNGG 2 cut(s) 163, 240
BseMII CTCAG 2 cut(s) 426, 782
BseNI ACTGG 2 cut(s) 200, 245
BseRI GAGGAG 2 cut(s) 102, 146
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 3 cut(s) 164, 551, 663
Bsh1285I CGRYCG 2 cut(s) 271, 456
BshFI GGCC 3 cut(s) 167, 388, 500
BshVI ATCGAT 2 cut(s) 142, 486
BsiEI CGRYCG 2 cut(s) 271, 456
BsiSI CCGG 3 cut(s) 187, 214, 259
BslFI GGGAC 3 cut(s) 121, 175, 237
BslI CCNNNNNNNGG 2 cut(s) 163, 240
BsmAI GTCTC 2 cut(s) 673, 754
BsmFI GGGAC 3 cut(s) 121, 175, 237
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 167, 388, 500
Bsp13I TCCGGA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 3 cut(s) 143, 487, 775
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 3 cut(s) 162, 164, 361
BspANI GGCC 3 cut(s) 167, 388, 500
BspCNI CTCAG 2 cut(s) 427, 781
BspDI ATCGAT 2 cut(s) 142, 486
BspEI TCCGGA 1 cut(s) 213
BspFNI CGCG 3 cut(s) 164, 551, 663
BspLI GGNNCC 2 cut(s) 191, 799
BspPI GGATC 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 2 cut(s) 200, 245
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 3 cut(s) 143, 487, 775
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 628, 746
Bst6I CTCTTC 1 cut(s) 671
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 390, 558
BstDEI CTNAG 2 cut(s) 435, 768
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 49, 255, 297, 778
BstFNI CGCG 3 cut(s) 164, 551, 663
BstKTI GATC 3 cut(s) 146, 490, 778
BstMAI GTCTC 2 cut(s) 673, 754
BstMBI GATC 3 cut(s) 143, 487, 775
BstMCI CGRYCG 2 cut(s) 271, 456
BstMWI GCNNNNNNNGC 4 cut(s) 87, 367, 557, 562
BstSCI CCNGG 2 cut(s) 185, 258
BstSFI CTRYAG 2 cut(s) 429, 627
BstUI CGCG 3 cut(s) 164, 551, 663
BstV1I GCAGC 1 cut(s) 345
Bsu15I ATCGAT 2 cut(s) 142, 486
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 3 cut(s) 167, 388, 500
BsuTUI ATCGAT 2 cut(s) 142, 486
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 566
BtsCI GGATG 4 cut(s) 49, 255, 297, 778
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 2 cut(s) 390, 558
Cfr13I GGNCC 2 cut(s) 189, 797
Cfr42I CCGCGG 1 cut(s) 165
ClaI ATCGAT 2 cut(s) 142, 486
CseI GACGC 2 cut(s) 239, 557
Csp6I GTAC 2 cut(s) 493, 615
CviAII CATG 1 cut(s) 566
CviQI GTAC 2 cut(s) 493, 615
DdeI CTNAG 2 cut(s) 435, 768
DpnI GATC 3 cut(s) 145, 489, 777
DpnII GATC 3 cut(s) 143, 487, 775
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 671
Eco147I AGGCCT 1 cut(s) 500
Eco47I GGWCC 2 cut(s) 189, 797
FaeI CATG 1 cut(s) 569
FaiI YATR 5 cut(s) 71, 567, 576, 587, 705
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 3 cut(s) 121, 175, 237
FatI CATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 165, 359, 362
FokI GGATG 4 cut(s) 36, 242, 304, 765
Fsp4HI GCNGC 3 cut(s) 165, 359, 362
FspBI CTAG 4 cut(s) 54, 60, 653, 683
GluI GCNGC 3 cut(s) 165, 359, 362
HaeIII GGCC 3 cut(s) 167, 388, 500
HapII CCGG 3 cut(s) 187, 214, 259
HgaI GACGC 2 cut(s) 239, 557
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 569
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 2 cut(s) 320, 558
HinfI GANTC 4 cut(s) 17, 109, 195, 217
HpaII CCGG 3 cut(s) 187, 214, 259
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 441, 615
Hpy188I TCNGA 3 cut(s) 129, 466, 523
Hpy188III TCNNGA 6 cut(s) 21, 93, 192, 214, 407, 782
Hpy8I GTNNAC 2 cut(s) 441, 615
Hpy99I CGWCG 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 469, 599
HpyCH4III ACNGT 2 cut(s) 628, 746
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 3 cut(s) 4, 370, 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 367, 557, 562
HpyF3I CTNAG 2 cut(s) 435, 768
HpySE526I ACGT 1 cut(s) 617
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 569
Kpn2I TCCGGA 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 775
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 3 cut(s) 143, 487, 775
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 543, 639
MaeI CTAG 4 cut(s) 54, 60, 653, 683
MaeII ACGT 1 cut(s) 617
MalI GATC 3 cut(s) 145, 489, 777
MboI GATC 3 cut(s) 143, 487, 775
MboII GAAGA 5 cut(s) 320, 395, 688, 745, 838
MluCI AATT 3 cut(s) 24, 66, 467
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 600
MroI TCCGGA 1 cut(s) 213
MseI TTAA 2 cut(s) 324, 693
MslI CAYNNNNRTG 2 cut(s) 260, 783
MspA1I CMGCKG 2 cut(s) 164, 223
MspI CCGG 3 cut(s) 187, 214, 259
MspR9I CCNGG 2 cut(s) 187, 260
Mva1269I GAATGC 1 cut(s) 347
MvnI CGCG 3 cut(s) 164, 551, 663
MwoI GCNNNNNNNGC 4 cut(s) 87, 367, 557, 562
NciI CCSGG 2 cut(s) 187, 260
NdeII GATC 3 cut(s) 143, 487, 775
NlaIII CATG 1 cut(s) 569
NlaIV GGNNCC 2 cut(s) 191, 799
PceI AGGCCT 1 cut(s) 500
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 17, 195, 217
PflFI GACNNNGTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 3 cut(s) 166, 360, 363
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 191, 799
PspPI GGNCC 2 cut(s) 189, 797
PsyI GACNNNGTC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 2 cut(s) 494, 616
RsaNI GTAC 2 cut(s) 493, 615
RseI CAYNNNNRTG 2 cut(s) 260, 783
SacII CCGCGG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 324, 693
SatI GCNGC 3 cut(s) 165, 359, 362
Sau3AI GATC 3 cut(s) 143, 487, 775
Sau96I GGNCC 2 cut(s) 189, 797
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 187, 260
SfaNI GCATC 2 cut(s) 543, 639
SfcI CTRYAG 2 cut(s) 429, 627
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 2 cut(s) 189, 797
SmiMI CAYNNNNRTG 2 cut(s) 260, 783
Sse9I AATT 3 cut(s) 24, 66, 467
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 3 cut(s) 162, 164, 361
SspMI CTAG 4 cut(s) 54, 60, 653, 683
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 185, 258
TaaI ACNGT 2 cut(s) 628, 746
TaiI ACGT 1 cut(s) 620
TaqI TCGA 5 cut(s) 142, 452, 486, 731, 824
TaqII GACCGA 2 cut(s) 285, 470
TasI AATT 3 cut(s) 24, 66, 467
TatI WGTACW 1 cut(s) 492
TauI GCSGC 2 cut(s) 167, 364
TfiI GAWTC 3 cut(s) 17, 195, 217
Tru1I TTAA 2 cut(s) 324, 693
Tru9I TTAA 2 cut(s) 324, 693
TscAI CASTG 1 cut(s) 651
TseI GCWGC 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 651
Tth111I GACNNNGTC 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 189, 797
XapI RAATTY 2 cut(s) 24, 467
XspI CTAG 4 cut(s) 54, 60, 653, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.