Rmu_sc0020172.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020172.1
OG0000499
Physical Location & Seq
Reverse (-)
386 .. 905
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020172.1_g000001.1.cds

Sequence Viewer

Length: 267 bp
atgcttggactaagagcgtccgcacctaacccggatcttgtgttcaaccgaacatctacaaagcatgctcaagcagttatcttgatgcgatgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgatttggcaatgtccaagattccctcatccctgacttgaaggttcaatggaacaacctgcgctttgctgatttcaagtctgtagctgaatataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

88

Amino Acids

10.21

Weight (kDa)

7.92

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 234
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 42
AfeI AGCGCT 1 cut(s) 159
AgsI TTSAA 4 cut(s) 46, 208, 215, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 148, 254
AluI AGCT 2 cut(s) 148, 254
AlwI GGATC 1 cut(s) 42
Aor51HI AGCGCT 1 cut(s) 159
AspLEI GCGC 2 cut(s) 160, 231
AsuC2I CCSGG 1 cut(s) 32
BcnI CCSGG 1 cut(s) 32
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 3 cut(s) 75, 80, 127
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bse3DI GCAATG 1 cut(s) 184
BseGI GGATG 2 cut(s) 142, 195
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 32
Bsp143I GATC 2 cut(s) 34, 129
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 184
BssMI GATC 2 cut(s) 34, 129
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 11, 110
BstF5I GGATG 2 cut(s) 142, 195
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 231
BstKTI GATC 2 cut(s) 37, 132
BstMBI GATC 2 cut(s) 34, 129
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 142, 195
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 2 cut(s) 160, 231
CseI GACGC 1 cut(s) 6
CviAII CATG 1 cut(s) 65
CviJI RGCY 2 cut(s) 148, 254
CviKI_1 RGCY 2 cut(s) 148, 254
DdeI CTNAG 2 cut(s) 11, 110
DpnI GATC 2 cut(s) 36, 131
DpnII GATC 2 cut(s) 34, 129
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47III AGCGCT 1 cut(s) 159
FaeI CATG 1 cut(s) 68
FaiI YATR 7 cut(s) 66, 96, 98, 123, 125, 151, 261
FatI CATG 1 cut(s) 64
FauNDI CATATG 1 cut(s) 96
FokI GGATG 2 cut(s) 149, 182
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 159, 230
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 6
HhaI GCGC 2 cut(s) 160, 231
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 2 cut(s) 158, 229
HinP1I GCGC 2 cut(s) 158, 229
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 11, 110
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 2 cut(s) 158, 229
Kzo9I GATC 2 cut(s) 34, 129
LguI GCTCTTC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 45, 213, 239
LweI GCATC 3 cut(s) 75, 80, 127
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 36, 131
MboI GATC 2 cut(s) 34, 129
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 34
MluCI AATT 1 cut(s) 262
MnlI CCTC 1 cut(s) 203
MseI TTAA 1 cut(s) 265
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 96
NdeII GATC 2 cut(s) 34, 129
NlaIII CATG 1 cut(s) 68
NspI RCATGY 1 cut(s) 68
PaeI GCATGC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 265
Sau3AI GATC 2 cut(s) 34, 129
ScrFI CCNGG 1 cut(s) 32
SetI ASST 5 cut(s) 28, 150, 213, 228, 256
SfaNI GCATC 3 cut(s) 75, 80, 127
SfcI CTRYAG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SphI GCATGC 1 cut(s) 68
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 30
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 262
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
XceI RCATGY 1 cut(s) 68
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.