RchiOBHm_Chr1g0316871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000499
Physical Location & Seq
Reverse (-)
4359799 .. 4360475
677 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54725

Sequence Viewer

Length: 288 bp
ATGCAAGCTTCGCATGAGAAATATAGGAAAGCTATGGAAAAGGAGCTGATAGAAGGAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGTGATGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAACGGTGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGATGGACAGAATGGACCCAAAATGCGAAAAAGGAGAGGGTCGAAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.0

Weight (kDa)

9.41

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AfaI GTAC 1 cut(s) 64
AluBI AGCT 5 cut(s) 8, 32, 46, 215, 220
AluI AGCT 5 cut(s) 8, 32, 46, 215, 220
Alw26I GTCTC 2 cut(s) 121, 202
AspS9I GGNCC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 245
BccI CCATC 2 cut(s) 112, 227
BciVI GTATCC 1 cut(s) 64
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 121, 202
BfaI CTAG 2 cut(s) 101, 131
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 64
BlpI GCTNAGC 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 216
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 121, 202
Bsp143I GATC 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 247
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 76, 194
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 121, 202
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 111
BsuI GTATCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 8, 32, 46, 158, 215, 220
CviKI_1 RGCY 6 cut(s) 8, 32, 46, 158, 215, 220
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 245
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 24, 35, 153
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 223
FokI GGATG 1 cut(s) 213
FspBI CTAG 2 cut(s) 101, 131
Hin1II CATG 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 76, 194
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 1 cut(s) 243
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 101, 131
MaeII ACGT 1 cut(s) 65
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 136, 193, 286
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 148, 260
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 231
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 245
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 245
SetI ASST 6 cut(s) 10, 34, 48, 68, 217, 222
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 75
SgeI CNNG 8 cut(s) 17, 26, 113, 122, 143, 215, 233, 242
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 231
SspMI CTAG 2 cut(s) 101, 131
TaaI ACNGT 2 cut(s) 76, 194
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 179, 272
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 99
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 245
XspI CTAG 2 cut(s) 101, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.