Rorug01G0011500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000499
Physical Location & Seq
Reverse (-)
1926436 .. 1927125
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0011500.1

Sequence Viewer

Length: 690 bp
ATGACTCTAGAGAATGGGTTGACTTTTGAAGGAGTATCATACTTCCCTTATAGCGTTTCCATTACTGATATCCACTTGTACTATGGAAAAGGCAATGTGAGCAAAGCAACTTGTAGCCACTTGGCATTGGATCATAAAGAAGTGGCCGGAAAGGTAGTCCTCTGTGACAATCCCAGCGAGACTGACGTTTATGAAAAAGTGCAAGAGGTAAAGAGGGCAGGTGCATATGCTGGAATCTTTGTGACGGATGTGTCAGACTTATACCCAGAAGACTTCACCATTCCTATGATGATTCTGCCAACAGCTACTGGAGTTTACATTAAAGAGTACGCAACACAGGTGAATACAACCAAAGTTAAGAGCCTGACCTTCGTGCATACAAATTTGGGTACAAAACCAGCACCACAGGTGGCGGACTTCTCCTCAAGAGGACCAGACCCAATCAGCCCAAGTATTCTAAAACCAGACATTCATGCTCCAGGAGTTGATGTGTTGGCTGCAGTTGCACCTAATAGGCCAGTCGCAGGAGTAAGTAACTATGATTTAGTGGCAGAGTATGCAATCAAGTCGGGGACATCAATGGCTGCACCCCATGTAGCTGGGGTGGCAGCTTTGCTAAAAGCTGTACACCGCGACTGGAGCCCAGCAGCCATTCGATCAGCAATCATGCATGACAACAGCATACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.53

Weight (kDa)

5.95

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 43 - 104 5.8e-07 PA domain
Peptidase_S8 PF00082 124 - 224 1.2e-17 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 209
AasI GACNNNNNNGTC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 209
AccII CGCG 1 cut(s) 633
AciI CCGC 2 cut(s) 413, 631
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 4 cut(s) 80, 329, 391, 627
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 4 cut(s) 305, 599, 611, 623
AluI AGCT 4 cut(s) 305, 599, 611, 623
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 2 cut(s) 144, 515
ApeKI GCWGC 4 cut(s) 497, 584, 608, 647
ApoI RAATTY 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 2 cut(s) 268, 352
AvaII GGWCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 4 cut(s) 484, 571, 620, 659
BcgI CGANNNNNNTGC 2 cut(s) 549, 583
BciT130I CCWGG 1 cut(s) 480
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 4 cut(s) 498, 585, 609, 648
BlsI GCNGC 4 cut(s) 499, 586, 610, 649
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 641
BmrFI CCNGG 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 3 cut(s) 330, 462, 658
BpuEI CTTGAG 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse1I ACTGG 3 cut(s) 313, 518, 641
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 3 cut(s) 313, 518, 641
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 4 cut(s) 484, 571, 620, 659
BseYI CCCAGC 3 cut(s) 173, 599, 643
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 2 cut(s) 146, 517
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 2 cut(s) 146, 517
Bsp1286I GDGCHC 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 625
Bsp143I GATC 2 cut(s) 130, 656
BspACI CCGC 2 cut(s) 413, 631
BspANI GGCC 2 cut(s) 146, 517
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 641
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 625
BsrI ACTGG 3 cut(s) 313, 518, 641
BssMI GATC 2 cut(s) 130, 656
Bst2UI CCWGG 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 625
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 633
BstKTI GATC 2 cut(s) 133, 659
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 130, 656
BstMWI GCNNNNNNNGC 5 cut(s) 99, 503, 557, 605, 639
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 484, 571, 620, 659
BstV2I GAAGAC 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 599
BsuRI GGCC 2 cut(s) 146, 517
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 685
BveI ACCTGC 1 cut(s) 209
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 4 cut(s) 79, 328, 390, 626
CviAII CATG 4 cut(s) 473, 593, 667, 671
CviQI GTAC 4 cut(s) 79, 328, 390, 626
DpnI GATC 2 cut(s) 132, 658
DpnII GATC 2 cut(s) 130, 656
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 144
EciI GGCGGA 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 644
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 478
EcoRV GATATC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 644
FaeI CATG 4 cut(s) 476, 596, 670, 674
FaqI GGGAC 1 cut(s) 586
FatI CATG 4 cut(s) 472, 592, 666, 670
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 498, 585, 609, 648
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 4 cut(s) 498, 585, 609, 648
FspBI CTAG 1 cut(s) 8
GluI GCNGC 4 cut(s) 498, 585, 609, 648
GsaI CCCAGC 3 cut(s) 177, 603, 647
GsuI CTGGAG 3 cut(s) 330, 462, 658
HaeIII GGCC 2 cut(s) 146, 517
HapII CCGG 1 cut(s) 147
Hin1II CATG 4 cut(s) 476, 596, 670, 674
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 3 cut(s) 4, 234, 292
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 268, 352
Hpy166II GTNNAC 3 cut(s) 21, 316, 628
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 8, 426
Hpy8I GTNNAC 3 cut(s) 21, 316, 628
HpyAV CCTTC 2 cut(s) 23, 379
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 8 cut(s) 202, 224, 376, 500, 506, 560, 587, 670
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 503, 557, 605, 639
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 4 cut(s) 476, 596, 670, 674
Kzo9I GATC 2 cut(s) 130, 656
LmnI GCTCC 2 cut(s) 481, 639
Lsp1109I GCAGC 4 cut(s) 484, 571, 620, 659
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 164, 241, 533
MalI GATC 2 cut(s) 132, 658
MboI GATC 2 cut(s) 130, 656
MboII GAAGA 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 1 cut(s) 382
MnlI CCTC 5 cut(s) 170, 199, 207, 422, 433
Mph1103I ATGCAT 1 cut(s) 672
MseI TTAA 2 cut(s) 321, 357
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 5 cut(s) 99, 503, 557, 605, 639
NdeI CATATG 1 cut(s) 226
NdeII GATC 2 cut(s) 130, 656
NlaIII CATG 4 cut(s) 476, 596, 670, 674
NlaIV GGNNCC 1 cut(s) 641
NmuCI GTSAC 2 cut(s) 164, 241
NsiI ATGCAT 1 cut(s) 672
PaqCI CACCTGC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 234, 292
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 4 cut(s) 499, 586, 610, 649
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 3 cut(s) 173, 599, 643
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 641
PspPI GGNCC 1 cut(s) 431
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 4 cut(s) 80, 329, 391, 627
RsaNI GTAC 4 cut(s) 79, 328, 390, 626
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 2 cut(s) 321, 357
SatI GCNGC 4 cut(s) 498, 585, 609, 648
Sau3AI GATC 2 cut(s) 130, 656
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 1 cut(s) 644
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 1 cut(s) 382
SsiI CCGC 2 cut(s) 413, 631
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 478
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 655
TasI AATT 1 cut(s) 382
TatI WGTACW 2 cut(s) 78, 625
TfiI GAWTC 2 cut(s) 234, 292
Tru1I TTAA 2 cut(s) 321, 357
Tru9I TTAA 2 cut(s) 321, 357
TseFI GTSAC 2 cut(s) 164, 241
TseI GCWGC 4 cut(s) 497, 584, 608, 647
Tsp45I GTSAC 2 cut(s) 164, 241
TspDTI ATGAA 2 cut(s) 207, 461
TspGWI ACGGA 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 1 cut(s) 382
XbaI TCTAGA 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XspI CTAG 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.