Rh1DG018200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Forward (+)
2923560 .. 2934197
10638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG018200.1

Sequence Viewer

Length: 1101 bp
ATGGTCTGTGCTGACCATGAAACCAGGATCGGTGCACACCGTATATTGTCTGTTGTTCTTGTTCCATCTTCTGTTTGCCCCCGTCCTCTTGCTGCTACTCCCCACACTTCAAAGAAAAGTCCTATTGGAAGGACACTCTCAAGAACTGTATCTGTGTTTTCTTCTTCAGCTGCTTTCTTTGAGAAATTAAAGAAGGAGCCATCTCACTCGCAAGAAAACATTAGTCATGAGACCAAGAACAATGCTGTCTTTGGTGAAGAAGCAAAGGTTACTAACGGCTCGATGTTGCACAGATTGAAATCCAAATTCAGTTCAAAAAGACATGCAGCAGCTTCAAATGAACAGCTAGGTGCTGAGGAAGCTACACACAACAACCATCCTACAATGCACAGATCGAAGTCAACTTTAAGCCGAAACTACAGTATGAAAAGGCAACCATCAACTATGACTGTTGATACAACAGCTCCAAGTGTTCCACATAATGAATCGTCGTACAAAGCAAACTTCCGATTTCAATCTGCTTCTAATAACTTCGGACTCTCAATTAGGGGCAGCATGTCAAGCAGGGGCAAGGTTTCGAATCTTAAAGAAAAGATTATTAAATGCCAAGACGAAACGCTGCAGCTATTGCAGGAGAAACAGATGTGGTCTGAAAAATCCAAAATTATGGAACAGACAGAAGCTGTCCTGAGAAGAGAAAAACTATGCAATTCGATCCAACCATCTAAATTTGAAAAGGAACTTGAGGATCTGAAAAAGGCCTTGAAGAATGAGGAGGAGAATGAATCCGCAATAAAAGAGAATTTTGACCGTAGGCAAGTTAGCTATGCTGAATATAAGAAATCTATGGATTTACAGCTGATAAAAATTGAGCGAAACTTAGTTGAGCTAGGGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTTAAAAATCTTGATGTCTTCTGTGGGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGCTTGATCATCCTGGTGGACAGAATGGACAGAAAACACGAAAAAGGCGAGGTTCGAAGAAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

41.27

Weight (kDa)

9.69

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 789
AclWI GGATC 3 cut(s) 35, 709, 756
AcsI RAATTY 3 cut(s) 305, 728, 802
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 494
AgsI TTSAA 7 cut(s) 111, 298, 315, 336, 515, 734, 766
AjnI CCWGG 2 cut(s) 23, 1042
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 3 cut(s) 224, 934, 1015
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 3 cut(s) 35, 709, 756
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 1 cut(s) 759
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 7 cut(s) 92, 170, 326, 329, 552, 619, 622
ApoI RAATTY 3 cut(s) 305, 728, 802
AsuHPI GGTGA 1 cut(s) 266
AsuII TTCGAA 2 cut(s) 578, 1085
BaeGI GKGCMC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 952
Bbv12I GWGCWC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 7 cut(s) 79, 157, 338, 341, 564, 606, 634
BccI CCATC 6 cut(s) 73, 208, 384, 445, 730, 925
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 25, 1044
BclI TGATCA 1 cut(s) 1036
BcoDI GTCTC 3 cut(s) 224, 934, 1015
BfaI CTAG 3 cut(s) 347, 890, 1002
BfmI CTRYAG 2 cut(s) 418, 620
BisI GCNGC 7 cut(s) 93, 171, 327, 330, 553, 620, 623
BlpI GCTNAGC 1 cut(s) 1029
BlsI GCNGC 7 cut(s) 94, 172, 328, 331, 554, 621, 624
Bme1390I CCNGG 2 cut(s) 25, 1044
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 25, 1044
BpiI GAAGAC 1 cut(s) 952
Bpu10I CCTNAGC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 1029
Bpu14I TTCGAA 2 cut(s) 578, 1085
BpuEI CTTGAG 2 cut(s) 124, 764
BsaBI GATNNNNATC 2 cut(s) 298, 514
BsaI GGTCTC 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bse8I GATNNNNATC 2 cut(s) 298, 514
BseBI CCWGG 2 cut(s) 25, 1044
BseGI GGATG 2 cut(s) 376, 1039
BseJI GATNNNNATC 2 cut(s) 298, 514
BseMII CTCAG 2 cut(s) 345, 680
BseRI GAGGAG 2 cut(s) 788, 791
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 7 cut(s) 79, 157, 338, 341, 564, 606, 634
BshFI GGCC 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 37
BsmAI GTCTC 3 cut(s) 224, 934, 1015
BsnI GGCC 1 cut(s) 761
Bso31I GGTCTC 1 cut(s) 224
Bsp119I TTCGAA 2 cut(s) 578, 1085
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 5 cut(s) 27, 392, 714, 748, 1036
Bsp1720I GCTNAGC 1 cut(s) 1029
BspACI CCGC 1 cut(s) 789
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 2 cut(s) 346, 681
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 624
BspPI GGATC 3 cut(s) 35, 709, 756
BspT104I TTCGAA 2 cut(s) 578, 1085
BspTNI GGTCTC 1 cut(s) 224
BssMI GATC 5 cut(s) 27, 392, 714, 748, 1036
Bst2UI CCWGG 2 cut(s) 25, 1044
Bst4CI ACNGT 6 cut(s) 41, 148, 422, 451, 812, 912
Bst6I CTCTTC 2 cut(s) 688, 932
BstAPI GCANNNNNTGC 1 cut(s) 628
BstBI TTCGAA 2 cut(s) 578, 1085
BstDEI CTNAG 5 cut(s) 354, 689, 880, 1029, 1095
BstF5I GGATG 2 cut(s) 376, 1039
BstKTI GATC 5 cut(s) 30, 395, 717, 751, 1039
BstMAI GTCTC 3 cut(s) 224, 934, 1015
BstMBI GATC 5 cut(s) 27, 392, 714, 748, 1036
BstMWI GCNNNNNNNGC 4 cut(s) 359, 561, 628, 921
BstNI CCWGG 2 cut(s) 25, 1044
BstNSI RCATGY 2 cut(s) 326, 559
BstSCI CCNGG 2 cut(s) 23, 1042
BstSFI CTRYAG 2 cut(s) 418, 620
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 7 cut(s) 79, 157, 338, 341, 564, 606, 634
BstV2I GAAGAC 1 cut(s) 952
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 1 cut(s) 748
BsuRI GGCC 1 cut(s) 761
BtsCI GGATG 2 cut(s) 376, 1039
CaiI CAGNNNCTG 1 cut(s) 683
CciI TCATGA 1 cut(s) 226
CseI GACGC 1 cut(s) 930
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 17, 227, 323, 556
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 5 cut(s) 354, 689, 880, 1029, 1095
DpnI GATC 5 cut(s) 29, 394, 716, 750, 1038
DpnII GATC 5 cut(s) 27, 392, 714, 748, 1036
Eam1104I CTCTTC 2 cut(s) 688, 932
EarI CTCTTC 2 cut(s) 688, 932
Eco147I AGGCCT 1 cut(s) 761
Eco31I GGTCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 23, 1042
FaeI CATG 4 cut(s) 20, 230, 326, 559
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FatI CATG 4 cut(s) 16, 226, 322, 555
FbaI TGATCA 1 cut(s) 1036
Fnu4HI GCNGC 7 cut(s) 93, 171, 327, 330, 553, 620, 623
FokI GGATG 2 cut(s) 363, 1026
Fsp4HI GCNGC 7 cut(s) 93, 171, 327, 330, 553, 620, 623
FspBI CTAG 3 cut(s) 347, 890, 1002
GluI GCNGC 7 cut(s) 93, 171, 327, 330, 553, 620, 623
HaeIII GGCC 1 cut(s) 761
HgaI GACGC 1 cut(s) 930
Hin1II CATG 4 cut(s) 20, 230, 326, 559
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 7 cut(s) 485, 537, 580, 785, 900, 989, 998
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 3 cut(s) 35, 402, 1049
Hpy188I TCNGA 4 cut(s) 509, 536, 652, 753
Hpy188III TCNNGA 6 cut(s) 141, 227, 688, 897, 953, 986
Hpy8I GTNNAC 3 cut(s) 35, 402, 1049
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 4 cut(s) 123, 187, 988, 1025
HpyCH4III ACNGT 6 cut(s) 41, 148, 422, 451, 812, 912
HpyCH4V TGCA 8 cut(s) 35, 289, 326, 388, 622, 631, 708, 915
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 561, 628, 921
HpyF3I CTNAG 5 cut(s) 354, 689, 880, 1029, 1095
Hsp92II CATG 4 cut(s) 20, 230, 326, 559
Ksp22I TGATCA 1 cut(s) 1036
Kzo9I GATC 5 cut(s) 27, 392, 714, 748, 1036
LmnI GCTCC 2 cut(s) 196, 469
LpnPI CCDG 8 cut(s) 10, 37, 550, 617, 701, 882, 1029, 1056
Lsp1109I GCAGC 7 cut(s) 79, 157, 338, 341, 564, 606, 634
MaeI CTAG 3 cut(s) 347, 890, 1002
MaeIII GTNAC 1 cut(s) 268
MalI GATC 5 cut(s) 29, 394, 716, 750, 1038
MboI GATC 5 cut(s) 27, 392, 714, 748, 1036
MboII GAAGA 9 cut(s) 60, 153, 156, 269, 705, 778, 949, 952, 1099
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 8 cut(s) 185, 305, 543, 663, 709, 728, 802, 867
MlyI GAGTC 3 cut(s) 531, 909, 1007
MmeI TCCRAC 1 cut(s) 742
MnlI CCTC 6 cut(s) 96, 349, 739, 766, 769, 1073
MseI TTAA 5 cut(s) 188, 407, 585, 600, 945
MslI CAYNNNNRTG 2 cut(s) 929, 1044
MspA1I CMGCKG 2 cut(s) 170, 859
MspR9I CCNGG 2 cut(s) 25, 1044
MvaI CCWGG 2 cut(s) 25, 1044
MwoI GCNNNNNNNGC 4 cut(s) 359, 561, 628, 921
NdeII GATC 5 cut(s) 27, 392, 714, 748, 1036
NlaIII CATG 4 cut(s) 20, 230, 326, 559
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 2 cut(s) 326, 559
NspV TTCGAA 2 cut(s) 578, 1085
PagI TCATGA 1 cut(s) 226
PceI AGGCCT 1 cut(s) 761
PcsI WCGNNNNNNNCGW 1 cut(s) 1075
PfeI GAWTC 4 cut(s) 485, 580, 785, 989
PkrI GCNGC 7 cut(s) 94, 172, 328, 331, 554, 621, 624
PleI GAGTC 3 cut(s) 531, 908, 1006
PpsI GAGTC 3 cut(s) 531, 908, 1006
Psp6I CCWGG 2 cut(s) 23, 1042
PspGI CCWGG 2 cut(s) 23, 1042
PspN4I GGNNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 624
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 748
PvuII CAGCTG 2 cut(s) 170, 859
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 2 cut(s) 929, 1044
SaqAI TTAA 5 cut(s) 188, 407, 585, 600, 945
SatI GCNGC 7 cut(s) 93, 171, 327, 330, 553, 620, 623
Sau3AI GATC 5 cut(s) 27, 392, 714, 748, 1036
SchI GAGTC 3 cut(s) 531, 909, 1007
ScrFI CCNGG 2 cut(s) 25, 1044
SduI GDGCHC 1 cut(s) 37
SfcI CTRYAG 2 cut(s) 418, 620
SfuI TTCGAA 2 cut(s) 578, 1085
SmiMI CAYNNNNRTG 2 cut(s) 929, 1044
SmlI CTYRAG 2 cut(s) 139, 743
SmoI CTYRAG 2 cut(s) 139, 743
Sse9I AATT 8 cut(s) 185, 305, 543, 663, 709, 728, 802, 867
SseBI AGGCCT 1 cut(s) 761
SsiI CCGC 1 cut(s) 789
SspMI CTAG 3 cut(s) 347, 890, 1002
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 2 cut(s) 23, 1042
TaaI ACNGT 6 cut(s) 41, 148, 422, 451, 812, 912
TaqI TCGA 7 cut(s) 281, 395, 578, 713, 987, 992, 1085
TasI AATT 8 cut(s) 185, 305, 543, 663, 709, 728, 802, 867
TfiI GAWTC 4 cut(s) 485, 580, 785, 989
Tru1I TTAA 5 cut(s) 188, 407, 585, 600, 945
Tru9I TTAA 5 cut(s) 188, 407, 585, 600, 945
TseI GCWGC 7 cut(s) 92, 170, 326, 329, 552, 619, 622
TspDTI ATGAA 6 cut(s) 33, 354, 440, 498, 798, 921
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 3 cut(s) 305, 728, 802
XceI RCATGY 2 cut(s) 326, 559
XspI CTAG 3 cut(s) 347, 890, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.