Rh1DG019100

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Reverse (-)
3074849 .. 3075684
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG019100.1

Sequence Viewer

Length: 684 bp
ATGACTATCTCAGGCTTTGGTACCGACGAGAGAGTTGGTACATTTATTGACGCCTTTTATGTGGCTTACTATACGGTCTTCTCAGTTGGTTTCGGCGATATTTCTCCTCTGAAGTCTCTTACTCGGATTCTTTGTGATGTGCTGGGATTGGTGGTTGGACCTATTGTAGTGATGGTACTCACTCATTTTTTGGGTCGGTTAGCATGCGAGTTGGGGCGGCGGATTTCATCTCGCTTCCGTATGAGATATCGAGTGTATTCAGCTCTTGGTATGATCTTGCTGGCTCTATTTTTGGGGATGGCCGGCATTTATATCTTCGAGTGGCTACACCTAGCTAGTGGATCTCCATCTCCATCTCCATCTCCTTCCACTATGTTACCTACTGATGCATACGCATGGGTCCTCTTTGTTGACATATTCCACCTCTCAGTTATGATGATGACTACCACTGGATTTGGAGATTTCGCCTTCACTACTGCATCTGGGAGAGCGTTCACCATAGTATGGGTTCCTTTCTCTACTATAGTGTTTATGGTTGTTACAGCTTTCCCCAGGGGATCCACCATCACTGACGAGCATGGAGGATCCAGTTTCGTCATTCTTGGATACATTTGTCATGTTGATGATAGTATTAGTATTTCTTTTCGAACAGATTCAGTGTTAGTAGTGTTTATGGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

227

Amino Acids

24.97

Weight (kDa)

5.89

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 13 - 64 1.7e-08 Ion channel
Ion_trans_2 PF07885 135 - 182 3.2e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 504
AciI CCGC 2 cut(s) 217, 220
AclWI GGATC 5 cut(s) 349, 552, 565, 579, 592
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 22, 40, 177
AfiI CCNNNNNNNGG 1 cut(s) 504
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 3 cut(s) 263, 335, 545
AluI AGCT 3 cut(s) 263, 335, 545
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 5 cut(s) 349, 552, 565, 579, 592
AoxI GGCC 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 652
Asp718I GGTACC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 158, 400
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 2 cut(s) 158, 400
BaeI ACNNNNGTAYC 2 cut(s) 598, 631
BamHI GGATCC 2 cut(s) 557, 584
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 70
BccI CCATC 6 cut(s) 166, 292, 355, 361, 367, 572
BciT130I CCWGG 1 cut(s) 553
BciVI GTATCC 1 cut(s) 599
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 2 cut(s) 332, 336
BfmI CTRYAG 1 cut(s) 522
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 2 cut(s) 158, 400
BmgT120I GGNCC 2 cut(s) 158, 400
BmiI GGNNCC 5 cut(s) 22, 401, 510, 559, 586
BmrFI CCNGG 1 cut(s) 553
BmsI GCATC 2 cut(s) 376, 488
BpiI GAAGAC 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 551, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 454, 588
Bse8I GATNNNNATC 1 cut(s) 346
BseBI CCWGG 1 cut(s) 553
BseDI CCNNGG 2 cut(s) 551, 552
BseGI GGATG 1 cut(s) 303
BseJI GATNNNNATC 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMII CTCAG 3 cut(s) 24, 96, 441
BseNI ACTGG 2 cut(s) 454, 588
BseRI GAGGAG 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 646
Bsp143I GATC 4 cut(s) 273, 341, 557, 584
BspACI CCGC 2 cut(s) 217, 220
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 3 cut(s) 23, 95, 440
BspLI GGNNCC 5 cut(s) 22, 401, 510, 559, 586
BspPI GGATC 5 cut(s) 349, 552, 565, 579, 592
BspT104I TTCGAA 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 454, 588
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 551, 552
BssMI GATC 4 cut(s) 273, 341, 557, 584
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 205, 282, 304
BstDEI CTNAG 3 cut(s) 10, 82, 427
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 4 cut(s) 276, 344, 560, 587
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 273, 341, 557, 584
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 522
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 3 cut(s) 341, 557, 584
BstYI RGATCY 3 cut(s) 341, 557, 584
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 447, 567, 663
Cac8I GCNNGC 3 cut(s) 205, 282, 304
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 158, 400
CseI GACGC 1 cut(s) 59
Csp6I GTAC 3 cut(s) 21, 39, 176
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 4 cut(s) 204, 396, 578, 617
CviJI RGCY 8 cut(s) 15, 65, 263, 284, 302, 325, 335, 545
CviKI_1 RGCY 8 cut(s) 15, 65, 263, 284, 302, 325, 335, 545
CviQI GTAC 3 cut(s) 21, 39, 176
DdeI CTNAG 3 cut(s) 10, 82, 427
DpnI GATC 4 cut(s) 275, 343, 559, 586
DpnII GATC 4 cut(s) 273, 341, 557, 584
EaeI YGGCCR 1 cut(s) 300
EciI GGCGGA 1 cut(s) 235
Eco32I GATATC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 158, 400
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 551
EcoRV GATATC 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 391
FaeI CATG 4 cut(s) 207, 399, 581, 620
FatI CATG 4 cut(s) 203, 395, 577, 616
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 2 cut(s) 332, 336
GluI GCNGC 1 cut(s) 218
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 302
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 207, 399, 581, 620
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 2 cut(s) 127, 653
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 2 cut(s) 412, 495
Hpy188I TCNGA 2 cut(s) 111, 126
Hpy8I GTNNAC 2 cut(s) 412, 495
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 375, 478
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 389, 479
HpyF3I CTNAG 3 cut(s) 10, 82, 427
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 207, 399, 581, 620
KpnI GGTACC 1 cut(s) 24
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Kzo9I GATC 4 cut(s) 273, 341, 557, 584
LpnPI CCDG 8 cut(s) 128, 266, 316, 435, 468, 538, 565, 601
LweI GCATC 2 cut(s) 376, 488
MaeI CTAG 2 cut(s) 332, 336
MaeIII GTNAC 2 cut(s) 375, 538
MalI GATC 4 cut(s) 275, 343, 559, 586
MboI GATC 4 cut(s) 273, 341, 557, 584
MboII GAAGA 2 cut(s) 70, 307
MflI RGATCY 3 cut(s) 341, 557, 584
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 4 cut(s) 117, 413, 434, 575
Mph1103I ATGCAT 1 cut(s) 391
MroNI GCCGGC 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 652
MslI CAYNNNNRTG 2 cut(s) 394, 621
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 553
NaeI GCCGGC 1 cut(s) 304
NdeII GATC 4 cut(s) 273, 341, 557, 584
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 4 cut(s) 207, 399, 581, 620
NlaIV GGNNCC 5 cut(s) 22, 401, 510, 559, 586
NsiI ATGCAT 1 cut(s) 391
NspI RCATGY 1 cut(s) 207
NspV TTCGAA 1 cut(s) 646
PaeI GCATGC 1 cut(s) 207
PasI CCCWGGG 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 2 cut(s) 127, 653
PflMI CCANNNNNTGG 1 cut(s) 504
PkrI GCNGC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 400
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 5 cut(s) 22, 401, 510, 559, 586
PspPI GGNCC 2 cut(s) 158, 400
PspPPI RGGWCCY 1 cut(s) 400
PsuI RGATCY 3 cut(s) 341, 557, 584
RsaI GTAC 3 cut(s) 22, 40, 177
RsaNI GTAC 3 cut(s) 21, 39, 176
RseI CAYNNNNRTG 2 cut(s) 394, 621
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 4 cut(s) 273, 341, 557, 584
Sau96I GGNCC 2 cut(s) 158, 400
ScrFI CCNGG 1 cut(s) 553
SetI ASST 7 cut(s) 163, 265, 333, 337, 382, 426, 547
SfaNI GCATC 2 cut(s) 376, 488
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 2 cut(s) 158, 400
SmiMI CAYNNNNRTG 2 cut(s) 394, 621
SphI GCATGC 1 cut(s) 207
SsiI CCGC 2 cut(s) 217, 220
SspMI CTAG 2 cut(s) 332, 336
StyD4I CCNGG 1 cut(s) 551
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 250, 318, 646
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 2 cut(s) 127, 653
TscAI CASTG 3 cut(s) 454, 574, 663
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 3 cut(s) 454, 574, 663
Van91I CCANNNNNTGG 1 cut(s) 504
VpaK11BI GGWCC 2 cut(s) 158, 400
XceI RCATGY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 2 cut(s) 332, 336
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.