RchiOBHm_Chr4g0402171

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
20694072 .. 20698419
4348 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37399

Sequence Viewer

Length: 1137 bp
ATGATGCCAGAACAAAAGCAGCCTGATGCTTGGGAAGGGGAGCGGGCTAACCTTAACAGCCAGATATCCGTGTTGACTGCAAAGGTGAAGAGCTTAGAAAATAAGCTGGTTATTGATAACAATGCATGGGCAGCGCAGAAGGTTCGCAGTGAGGGAACTTACAAAGCCCAAATAGAGAATTTGGGGGCTATAAATCTGAAGTTATGTGGGGATATACGCAAGCTTGAGCAGAGGCTAGTGAAAGGTAGTAGCGATGCTGCTCAGCTTTATAAAAAGGAGAAGAAGCTTGAGAAGATAGAGGCGCGTCAGAAGAGGGAAGAAGAATCACTTGGGGACAGGAAAAGGGTTCTTGAGCATCAGCTTAAAGCATTTGAGAGGACGACTCAGGCGGTGCGCTCTTTCGCCTTCTTTGGCCGTGATACCCCGGATACCGACCTAGGATTCATTTCATCTGGGTGGATCATTTTTATGGCCTTTAGTCATATGATGTTTGGATTGGTATGTTTTGGATTTTTAGGAGATCGCACCTATGACACTTTTGTCGCTGCATATTATACCTCATCTGTTACGGTGTATACAGTGGGATTTGGTGATGTTACCCCTCCGTTAGTCTACGCTTGGATTATTGATTTGATGTCGATTCTCGCACAGTTTGCTCCCATTATCGTTTCTTTCTGGGTGCGTCACGTAGCACAGAGATTAGACCGGAGATATCTATCTGATATACAGACTGCACAGCGGAGGCATCTCTTTCGACTATTTGCAGCTTTTTCCACGATCATGGTGACCATTGGTTTGACGATGCTGGGCATCTATGTTTTTGAGAGAGATCGACCCATAGTTGATCCATGTCGTTCATGTTCATGTCCATGTCCATGTCCATCTCCATCTCCATCTCCATCTCATTCCGGCATTTCTTCTACACATGACTTGGGCATTTTGCAGATCATTCACTTGGCTATGATGATCGTGACTACAGTGGGATACGGAGATCTTGCTTTTTCGACTATTTCTGGGAGACTATTCGCCACATTTTGGATTCCCATCTGTGTTCCCTTGTTTGCTGCAGCGACATCATATCTTGTGGAGGCTATCATACACTATTCTAGAAAGCGACCTATGATAGGTATCGTTTGA

Protein Analysis

378

Amino Acids

42.56

Weight (kDa)

9.03

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 313 - 365 1.7e-10 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
AasI GACNNNNNNGTC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 1035
AccBSI CCGCTC 1 cut(s) 43
AccI GTMKAC 2 cut(s) 575, 612
AccII CGCG 1 cut(s) 304
AciI CCGC 3 cut(s) 43, 389, 739
AclWI GGATC 2 cut(s) 467, 839
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 1035, 1124
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 7 cut(s) 93, 106, 223, 265, 286, 361, 767
AluI AGCT 7 cut(s) 93, 106, 223, 265, 286, 361, 767
Alw26I GTCTC 1 cut(s) 1012
AlwI GGATC 2 cut(s) 467, 839
AoxI GGCC 2 cut(s) 412, 471
ApeKI GCWGC 7 cut(s) 19, 131, 257, 545, 764, 1064, 1067
ApoI RAATTY 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
AspA2I CCTAGG 1 cut(s) 436
AspLEI GCGC 3 cut(s) 136, 304, 396
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 97, 602, 796
AvrII CCTAGG 1 cut(s) 436
BbvI GCAGC 7 cut(s) 31, 143, 244, 532, 776, 1051, 1079
BccI CCATC 5 cut(s) 889, 895, 901, 907, 1052
BceAI ACGGC 1 cut(s) 399
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 734, 768
BciVI GTATCC 2 cut(s) 421, 977
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 1012
BfaI CTAG 3 cut(s) 236, 437, 1107
BfmI CTRYAG 2 cut(s) 975, 1065
BfuI GTATCC 2 cut(s) 421, 977
BglII AGATCT 1 cut(s) 991
BisI GCNGC 7 cut(s) 20, 132, 258, 546, 765, 1065, 1068
BlnI CCTAGG 1 cut(s) 436
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 7 cut(s) 21, 133, 259, 547, 766, 1066, 1069
Bme1390I CCNGG 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 6 cut(s) 16, 244, 364, 754, 792, 819
BplI GAGNNNNNCTC 2 cut(s) 367, 399
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 3 cut(s) 245, 308, 371
BpuMI CCSGG 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 688
BsaBI GATNNNNATC 3 cut(s) 715, 1043, 1127
BsaJI CCNNGG 2 cut(s) 423, 436
BsaWI WCCGGW 1 cut(s) 705
Bsc4I CCNNNNNNNGG 2 cut(s) 1035, 1124
Bse8I GATNNNNATC 3 cut(s) 715, 1043, 1127
BseDI CCNNGG 2 cut(s) 423, 436
BseJI GATNNNNATC 3 cut(s) 715, 1043, 1127
BseLI CCNNNNNNNGG 2 cut(s) 1035, 1124
BseMII CTCAG 2 cut(s) 275, 398
BseXI GCAGC 7 cut(s) 31, 143, 244, 532, 776, 1051, 1079
BseYI CCCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 414, 473
BsiSI CCGG 3 cut(s) 425, 706, 909
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 1035, 1124
BsmAI GTCTC 1 cut(s) 1012
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 2 cut(s) 414, 473
Bsp143I GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 3 cut(s) 43, 389, 739
BspANI GGCC 2 cut(s) 414, 473
BspCNI CTCAG 2 cut(s) 274, 397
BspFNI CGCG 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 2 cut(s) 467, 839
BspQI GCTCTTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 423, 436
BssMI GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
BssNAI GTATAC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 436
Bst1107I GTATAC 1 cut(s) 576
Bst4CI ACNGT 4 cut(s) 571, 580, 651, 979
Bst6I CTCTTC 2 cut(s) 83, 305
BstAPI GCANNNNNTGC 1 cut(s) 653
BstBAI YACGTR 1 cut(s) 688
BstC8I GCNNGC 2 cut(s) 45, 221
BstDEI CTNAG 3 cut(s) 94, 261, 384
BstEII GGTNACC 1 cut(s) 784
BstENI CCTNNNNNAGG 1 cut(s) 1122
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 3 cut(s) 136, 304, 396
BstKTI GATC 8 cut(s) 462, 523, 780, 832, 847, 948, 969, 994
BstMAI GTCTC 1 cut(s) 1012
BstMBI GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
BstMWI GCNNNNNNNGC 2 cut(s) 131, 653
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 2 cut(s) 975, 1065
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 7 cut(s) 31, 143, 244, 532, 776, 1051, 1079
BstX2I RGATCY 1 cut(s) 991
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 1 cut(s) 991
BstZ17I GTATAC 1 cut(s) 576
BsuI GTATCC 2 cut(s) 421, 977
BsuRI GGCC 2 cut(s) 414, 473
BtgZI GCGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 3 cut(s) 154, 585, 984
Cac8I GCNNGC 2 cut(s) 45, 221
CfoI GCGC 3 cut(s) 136, 304, 396
CseI GACGC 2 cut(s) 293, 671
CviAII CATG 8 cut(s) 126, 781, 849, 858, 864, 870, 876, 926
DdeI CTNAG 3 cut(s) 94, 261, 384
DpnI GATC 8 cut(s) 461, 522, 779, 831, 846, 947, 968, 993
DpnII GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 83, 305
EarI CTCTTC 2 cut(s) 83, 305
Eco130I CCWWGG 1 cut(s) 436
Eco32I GATATC 2 cut(s) 66, 713
Eco57I CTGAAG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 784
EcoNI CCTNNNNNAGG 1 cut(s) 1122
EcoO65I GGTNACC 1 cut(s) 784
EcoRV GATATC 2 cut(s) 66, 713
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 8 cut(s) 129, 784, 852, 861, 867, 873, 879, 929
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 347
FatI CATG 8 cut(s) 125, 780, 848, 857, 863, 869, 875, 925
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 483
FblI GTMKAC 2 cut(s) 575, 612
Fnu4HI GCNGC 7 cut(s) 20, 132, 258, 546, 765, 1065, 1068
Fsp4HI GCNGC 7 cut(s) 20, 132, 258, 546, 765, 1065, 1068
FspBI CTAG 3 cut(s) 236, 437, 1107
GlaI GCGC 3 cut(s) 135, 303, 395
GluI GCNGC 7 cut(s) 20, 132, 258, 546, 765, 1065, 1068
GsaI CCCAGC 1 cut(s) 809
HaeIII GGCC 2 cut(s) 414, 473
HapII CCGG 3 cut(s) 425, 706, 909
HgaI GACGC 2 cut(s) 293, 671
HhaI GCGC 3 cut(s) 136, 304, 396
Hin1II CATG 8 cut(s) 129, 784, 852, 861, 867, 873, 879, 929
Hin6I GCGC 3 cut(s) 134, 302, 394
HinP1I GCGC 3 cut(s) 134, 302, 394
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 2 cut(s) 221, 284
HinfI GANTC 5 cut(s) 323, 382, 441, 640, 1039
HpaII CCGG 3 cut(s) 425, 706, 909
HphI GGTGA 3 cut(s) 97, 602, 796
Hpy166II GTNNAC 3 cut(s) 75, 576, 613
Hpy188I TCNGA 3 cut(s) 198, 309, 721
Hpy188III TCNNGA 3 cut(s) 350, 970, 1107
Hpy8I GTNNAC 3 cut(s) 75, 576, 613
HpyAV CCTTC 3 cut(s) 29, 133, 415
HpyCH4III ACNGT 4 cut(s) 571, 580, 651, 979
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 7 cut(s) 80, 125, 548, 734, 764, 943, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 653
HpyF3I CTNAG 3 cut(s) 94, 261, 384
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 8 cut(s) 129, 784, 852, 861, 867, 873, 879, 929
HspAI GCGC 3 cut(s) 134, 302, 394
Kzo9I GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 40, 661
Lsp1109I GCAGC 7 cut(s) 31, 143, 244, 532, 776, 1051, 1079
LweI GCATC 6 cut(s) 16, 244, 364, 754, 792, 819
MaeI CTAG 3 cut(s) 236, 437, 1107
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 5 cut(s) 565, 595, 683, 784, 970
MalI GATC 8 cut(s) 461, 522, 779, 831, 846, 947, 968, 993
MbiI CCGCTC 1 cut(s) 43
MboI GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
MboII GAAGA 7 cut(s) 100, 292, 304, 322, 329, 332, 909
MflI RGATCY 1 cut(s) 991
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 9 cut(s) 145, 225, 292, 306, 369, 568, 612, 735, 1081
Mph1103I ATGCAT 1 cut(s) 127
MseI TTAA 2 cut(s) 54, 363
MslI CAYNNNNRTG 6 cut(s) 454, 467, 779, 862, 868, 874
MspA1I CMGCKG 1 cut(s) 739
MspI CCGG 3 cut(s) 425, 706, 909
MspR9I CCNGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 2 cut(s) 131, 653
NciI CCSGG 1 cut(s) 425
NdeI CATATG 1 cut(s) 483
NdeII GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
NlaIII CATG 8 cut(s) 129, 784, 852, 861, 867, 873, 879, 929
NmuCI GTSAC 3 cut(s) 683, 784, 970
NsiI ATGCAT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 83
PfeI GAWTC 4 cut(s) 323, 441, 640, 1039
PflMI CCANNNNNTGG 1 cut(s) 1035
PkrI GCNGC 7 cut(s) 21, 133, 259, 547, 766, 1066, 1069
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 688
PsiI TTATAA 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 805
PstI CTGCAG 1 cut(s) 1069
PsuI RGATCY 1 cut(s) 991
RseI CAYNNNNRTG 6 cut(s) 454, 467, 779, 862, 868, 874
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 54, 363
SatI GCNGC 7 cut(s) 20, 132, 258, 546, 765, 1065, 1068
Sau3AI GATC 8 cut(s) 459, 520, 777, 829, 844, 945, 966, 991
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 425
SfaNI GCATC 6 cut(s) 16, 244, 364, 754, 792, 819
SfcI CTRYAG 2 cut(s) 975, 1065
SmiMI CAYNNNNRTG 6 cut(s) 454, 467, 779, 862, 868, 874
SmlI CTYRAG 3 cut(s) 224, 287, 350
SmoI CTYRAG 3 cut(s) 224, 287, 350
Sse9I AATT 1 cut(s) 178
SsiI CCGC 3 cut(s) 43, 389, 739
SspMI CTAG 3 cut(s) 236, 437, 1107
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 4 cut(s) 571, 580, 651, 979
TaiI ACGT 1 cut(s) 690
TaqI TCGA 4 cut(s) 638, 754, 832, 1004
TasI AATT 1 cut(s) 178
TfiI GAWTC 4 cut(s) 323, 441, 640, 1039
Tru1I TTAA 2 cut(s) 54, 363
Tru9I TTAA 2 cut(s) 54, 363
TscAI CASTG 3 cut(s) 154, 585, 984
TseFI GTSAC 3 cut(s) 683, 784, 970
TseI GCWGC 7 cut(s) 19, 131, 257, 545, 764, 1064, 1067
Tsp45I GTSAC 3 cut(s) 683, 784, 970
TspDTI ATGAA 4 cut(s) 433, 438, 846, 852
TspGWI ACGGA 3 cut(s) 58, 594, 1002
TspRI CASTG 3 cut(s) 154, 585, 984
Van91I CCANNNNNTGG 1 cut(s) 1035
XagI CCTNNNNNAGG 1 cut(s) 1122
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 1106
XmaJI CCTAGG 1 cut(s) 436
XmiI GTMKAC 2 cut(s) 575, 612
XspI CTAG 3 cut(s) 236, 437, 1107
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.