Rmu_sc0002667.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002667.1
OG0000499
Physical Location & Seq
Forward (+)
10993 .. 11661
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002667.1_g000003.1.cds

Sequence Viewer

Length: 498 bp
atggaggctctgaaaaagcaattgcaagaggagtttgaggcactgcatggccagattgccaagattgttggggacaacgagaaagaatggaagacgatcgagaagcaaggatggctggacttccgggtcgactatgagcagttgattagggagcgggctgcacttgtaggagagcagcatgaaattgaaattgaggaagtgcgagaggaagagattcagactaaggaagagactattcagcggttggagttgaggaatagagaagagaggaaattgatgggaatgcgagccaaaatgttggtaggatcttccgatgcagagggtaaggttgatttggaagacattcagcttgtttgggaaggctttaggttgatgggcaagggctccatgttgatggacatgagattgaggaggatgggcaatagattgaggaagatgggaacgctatttaggttgatcagcattgggagtcgttggagaatcaaattaaggaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

19.66

Weight (kDa)

6.79

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 154, 241
AclWI GGATC 1 cut(s) 313
AcoI YGGCCR 1 cut(s) 49
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 313
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 158, 175
Asp700I GAANNNNTTC 2 cut(s) 213, 342
AsuC2I CCSGG 1 cut(s) 125
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 386
BbsI GAAGAC 2 cut(s) 98, 345
BbvI GCAGC 2 cut(s) 145, 187
BccI CCATC 6 cut(s) 105, 271, 367, 388, 409, 430
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 2 cut(s) 159, 176
BlsI GCNGC 2 cut(s) 160, 177
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 98, 345
BpuMI CCSGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 116, 420
BseRI GAGGAG 2 cut(s) 44, 424
BseXI GCAGC 2 cut(s) 145, 187
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 96, 305, 456
BspACI CCGC 2 cut(s) 154, 241
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 385
BspPI GGATC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 154
BssMI GATC 3 cut(s) 96, 305, 456
Bst6I CTCTTC 3 cut(s) 204, 222, 258
BstC8I GCNNGC 2 cut(s) 156, 288
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 116, 420
BstKTI GATC 3 cut(s) 99, 308, 459
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 96, 305, 456
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 145, 187
BstV2I GAAGAC 2 cut(s) 98, 345
BstX2I RGATCY 1 cut(s) 305
BstXI CCANNNNNNTGG 2 cut(s) 298, 394
BstYI RGATCY 1 cut(s) 305
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 2 cut(s) 116, 420
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 156, 288
CviAII CATG 4 cut(s) 47, 179, 388, 400
CviJI RGCY 8 cut(s) 8, 51, 115, 158, 290, 349, 363, 384
CviKI_1 RGCY 8 cut(s) 8, 51, 115, 158, 290, 349, 363, 384
DdeI CTNAG 1 cut(s) 222
DpnI GATC 3 cut(s) 98, 307, 458
DpnII GATC 3 cut(s) 96, 305, 456
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 3 cut(s) 204, 222, 258
EarI CTCTTC 3 cut(s) 204, 222, 258
Eco24I GRGCYC 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 4 cut(s) 50, 182, 391, 403
FaiI YATR 5 cut(s) 48, 135, 180, 389, 401
FaqI GGGAC 1 cut(s) 86
FatI CATG 4 cut(s) 46, 178, 387, 399
FauI CCCGC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 159, 176
FokI GGATG 2 cut(s) 123, 427
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 2 cut(s) 159, 176
GluI GCNGC 2 cut(s) 159, 176
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 124
Hin1II CATG 4 cut(s) 50, 182, 391, 403
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 214, 469, 480
HpaII CCGG 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 12, 219, 313
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 25, 46, 161, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 4 cut(s) 50, 182, 391, 403
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 3 cut(s) 96, 305, 456
LmnI GCTCC 2 cut(s) 151, 389
LpnPI CCDG 3 cut(s) 65, 101, 137
Lsp1109I GCAGC 2 cut(s) 145, 187
LweI GCATC 1 cut(s) 304
MalI GATC 3 cut(s) 98, 307, 458
MbiI CCGCTC 1 cut(s) 154
MboI GATC 3 cut(s) 96, 305, 456
MboII GAAGA 7 cut(s) 103, 221, 239, 275, 300, 350, 445
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 386
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 6 cut(s) 20, 183, 189, 272, 485, 493
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 1 cut(s) 478
MmeI TCCRAC 2 cut(s) 225, 455
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 2 cut(s) 213, 342
MscI TGGCCA 1 cut(s) 51
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 125
NdeII GATC 3 cut(s) 96, 305, 456
NlaIII CATG 4 cut(s) 50, 182, 391, 403
NlaIV GGNNCC 1 cut(s) 385
PctI GAATGC 1 cut(s) 288
PdmI GAANNNNTTC 2 cut(s) 213, 342
PfeI GAWTC 2 cut(s) 214, 480
PkrI GCNGC 2 cut(s) 160, 177
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PspN4I GGNNCC 1 cut(s) 385
PsuI RGATCY 1 cut(s) 305
PvuI CGATCG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 392
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 2 cut(s) 159, 176
Sau3AI GATC 3 cut(s) 96, 305, 456
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 386
SetI ASST 4 cut(s) 330, 351, 371, 455
SfaNI GCATC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 6 cut(s) 20, 183, 189, 272, 485, 493
SsiI CCGC 2 cut(s) 154, 241
StyD4I CCNGG 1 cut(s) 123
TaqI TCGA 2 cut(s) 99, 129
TasI AATT 6 cut(s) 20, 183, 189, 272, 485, 493
TfiI GAWTC 2 cut(s) 214, 480
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 158, 175
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 213, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.