Rorug01G0013500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000499
Physical Location & Seq
Forward (+)
2278723 .. 2279427
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0013500.1

Sequence Viewer

Length: 429 bp
ATGGATCGGGATGAACTATATGATGCTGGTGGAGTCTTCATTGGTGTTCTTGCCATAATCATACTGATCATTGTAATTTCTTACTGCCATCGCCGGCAAGCCCTGGTCGATCCGTCAGATCATGGTGAGTCATCTGCAACAATTGAACAAGGCCTTGATGAAGCTACAATATGTGCATATCCGAAGCTGCTTTACTCAGAAGCCAAGCTGCACATGTTTGATTCAATCTCCTGTACTCCTCCTTCTTGTTGCAGCATATGCTTGGCTGATTTTGAAGACAATGATGTATTGAGATCTGTCCCTAATTGTGGCCATTTCTTTCACCAAGTGTGCGTGGACAAATGGTTGCTGCTTCACCCCACATGCCCAGTTTGCAGGAACTCACTTCTTGATCCATTGACTTCTGTTGGTTCTGTAGAAGAGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.64

Weight (kDa)

4.58

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 83 - 126 2.4e-13 Ring finger domain
zf-rbx1 PF12678 83 - 126 3.1e-06 RING-H2 zinc finger domain
zf-RING_11 PF17123 84 - 112 5.9e-09 RING-like zinc finger
zf-C3HC4 PF00097 84 - 125 8.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 84 - 125 2.7e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 104, 386
AcoI YGGCCR 1 cut(s) 310
AdeI CACNNNGTG 1 cut(s) 328
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 146, 225, 275
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 3 cut(s) 164, 187, 208
AluI AGCT 3 cut(s) 164, 187, 208
AlwI GGATC 3 cut(s) 12, 104, 386
AoxI GGCC 2 cut(s) 151, 310
ApeKI GCWGC 4 cut(s) 187, 208, 252, 349
AsuHPI GGTGA 3 cut(s) 137, 314, 347
BalI TGGCCA 1 cut(s) 312
BarI GAAGNNNNNNTAC 4 cut(s) 176, 208, 226, 258
BbsI GAAGAC 2 cut(s) 28, 282
BbvI GCAGC 4 cut(s) 174, 195, 264, 336
BccI CCATC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 104
BclI TGATCA 1 cut(s) 66
BfaI CTAG 1 cut(s) 427
BfmI CTRYAG 1 cut(s) 414
BglII AGATCT 1 cut(s) 293
BisI GCNGC 4 cut(s) 188, 209, 253, 350
BlsI GCNGC 4 cut(s) 189, 210, 254, 351
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 362
BpiI GAAGAC 2 cut(s) 28, 282
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 4 cut(s) 174, 195, 264, 336
BsgI GTGCAG 1 cut(s) 194
BshFI GGCC 2 cut(s) 153, 312
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 153, 312
Bsp143I GATC 6 cut(s) 4, 66, 109, 118, 293, 391
BspANI GGCC 2 cut(s) 153, 312
BspCNI CTCAG 1 cut(s) 209
BspPI GGATC 3 cut(s) 12, 104, 386
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 6 cut(s) 4, 66, 109, 118, 293, 391
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 95, 99
BstDEI CTNAG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 6 cut(s) 7, 69, 112, 121, 296, 394
BstMBI GATC 6 cut(s) 4, 66, 109, 118, 293, 391
BstMWI GCNNNNNNNGC 2 cut(s) 258, 372
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 2 cut(s) 217, 366
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 174, 195, 264, 336
BstV2I GAAGAC 2 cut(s) 28, 282
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 2 cut(s) 153, 312
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 95, 99
Cfr10I RCCGGY 1 cut(s) 93
Csp6I GTAC 1 cut(s) 234
CviAII CATG 3 cut(s) 122, 214, 363
CviJI RGCY 8 cut(s) 101, 153, 164, 187, 203, 208, 266, 312
CviKI_1 RGCY 8 cut(s) 101, 153, 164, 187, 203, 208, 266, 312
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 196
DpnI GATC 6 cut(s) 6, 68, 111, 120, 295, 393
DpnII GATC 6 cut(s) 4, 66, 109, 118, 293, 391
DraIII CACNNNGTG 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco147I AGGCCT 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 125, 217, 366
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 121, 213, 362
FauNDI CATATG 1 cut(s) 257
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 188, 209, 253, 350
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 188, 209, 253, 350
FspBI CTAG 1 cut(s) 427
GluI GCNGC 4 cut(s) 188, 209, 253, 350
HaeIII GGCC 2 cut(s) 153, 312
HapII CCGG 1 cut(s) 94
Hin1II CATG 3 cut(s) 125, 217, 366
HinfI GANTC 3 cut(s) 33, 128, 221
HpaII CCGG 1 cut(s) 94
HphI GGTGA 3 cut(s) 137, 314, 347
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 118, 183, 199
Hpy188III TCNNGA 2 cut(s) 8, 389
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 137, 176, 211, 252, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 372
HpyF3I CTNAG 1 cut(s) 196
Hsp92II CATG 3 cut(s) 125, 217, 366
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 6 cut(s) 4, 66, 109, 118, 293, 391
LpnPI CCDG 7 cut(s) 12, 89, 107, 116, 244, 361, 381
Lsp1109I GCAGC 4 cut(s) 174, 195, 264, 336
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 427
MalI GATC 6 cut(s) 6, 68, 111, 120, 295, 393
MboI GATC 6 cut(s) 4, 66, 109, 118, 293, 391
MboII GAAGA 2 cut(s) 28, 287
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 75, 141, 304
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 2 cut(s) 42, 137
MnlI CCTC 2 cut(s) 249, 415
Mox20I TGGCCA 1 cut(s) 312
MroNI GCCGGC 1 cut(s) 93
MscI TGGCCA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 312
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 258, 372
NaeI GCCGGC 1 cut(s) 95
NdeI CATATG 1 cut(s) 257
NdeII GATC 6 cut(s) 4, 66, 109, 118, 293, 391
NgoMIV GCCGGC 1 cut(s) 93
NlaIII CATG 3 cut(s) 125, 217, 366
NspI RCATGY 2 cut(s) 217, 366
PceI AGGCCT 1 cut(s) 153
PciI ACATGT 1 cut(s) 213
PdiI GCCGGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 4 cut(s) 189, 210, 254, 351
PleI GAGTC 2 cut(s) 41, 136
PpsI GAGTC 2 cut(s) 41, 136
PscI ACATGT 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SatI GCNGC 4 cut(s) 188, 209, 253, 350
Sau3AI GATC 6 cut(s) 4, 66, 109, 118, 293, 391
SchI GAGTC 2 cut(s) 42, 137
ScrFI CCNGG 1 cut(s) 104
SetI ASST 4 cut(s) 166, 189, 210, 426
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 414
Sse9I AATT 3 cut(s) 75, 141, 304
SseBI AGGCCT 1 cut(s) 153
SspMI CTAG 1 cut(s) 427
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 102
TaqI TCGA 1 cut(s) 108
TasI AATT 3 cut(s) 75, 141, 304
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 1 cut(s) 221
TseI GCWGC 4 cut(s) 187, 208, 252, 349
TspDTI ATGAA 3 cut(s) 27, 28, 174
TspGWI ACGGA 1 cut(s) 102
XceI RCATGY 2 cut(s) 217, 366
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.