Rh1AG021100

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
3912941 .. 3915140
2200 bp
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UTR
Exon/CDS
Intron
Rh1AG021100.1

Sequence Viewer

Length: 1026 bp
ATGCAAGCTGAGCATGATGAATATAGGAAAGCTAAGGAAAAACAGCTGACAGAAGTAGAGTGTTCGTTGGATACTATAGAGAAGAGATTGTCAGTGACGCTAGAATATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTACTCTCAAATCGAAGGAGTCTAGCCACGTCTCTCTTGTCAAAGAAGCTCAGCGACAGATTATTAAATGTCAAGAGGAATTGCTGCAGCTATTGCACGAGAAACAGTGGTGGCCTGACAAATCTAAACTTATGGAACAAAAAAAAAAGAGCGTTGTAGCTGACTTGGGAAGACATTCTATCCAAACATCTGAATTCAAAAAGGAACTCGACGATCTGAATAAGGCCTTGAAGCTTGCGGGGAAGTCTGAAACCAACGTAAGACTTACCCTTGGACGTACTCAGACTCAGGTTACTGGCATTGACACTCTACCTTGCATGTCGTTGGTCTATATGTTGCTCTACATGGCATTTCTTGTTCTACTTGCTTTTCGGGTTATATCATATTTCGATGTCACAGATGGTACCTTCATTGACGCACTTTATATTACTTCCGTTACGCTATTCACTATGGGTTTTGGGGATATTGCTCCTAAGTGGAGCGGTACTCTACTTTTCTGTGATATGTTGGGTATGTTTGGATGTATCATACCGTCTATCTACAGCCATTTTGTGGGTCAGATGGCAGATTGGTTGTATCAGAGGTATCTTTCTGGTGTGCAAAGTCGCCATAGGAGACGCTCCTATATGATGCCTTCAGTTGCTAGCACGATTTTAGTGCTTATACTTTCACGGATGGCAGCCATTTATTATTTTGAGAGGGAGCGACTTTGTAGACAGTTTCATACTCATACCTCTGCACGGATCATTCTTGACATATTTCACCTGACCGTTATGACCATGACTACGATTGGATATGGAGATTTCGCATTTGCTACTGCACATGGGAGAGCATTCGCTGCATTATGGATTCCTTTTTAA

Protein Analysis

341

Amino Acids

39.4

Weight (kDa)

8.55

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 173 - 243 2.4e-07 Ion channel
Ion_trans_2 PF07885 274 - 340 3.1e-07 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 718
AccBSI CCGCTC 1 cut(s) 648
AccI GTMKAC 1 cut(s) 880
AccII CGCG 1 cut(s) 111
AciI CCGC 2 cut(s) 404, 648
AclWI GGATC 1 cut(s) 917
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 3 cut(s) 445, 571, 652
AfiI CCNNNNNNNGG 2 cut(s) 718, 906
AgsI TTSAA 2 cut(s) 364, 397
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 7 cut(s) 8, 32, 46, 215, 256, 326, 400
AluI AGCT 7 cut(s) 8, 32, 46, 215, 256, 326, 400
Alw26I GTCTC 3 cut(s) 121, 202, 775
AlwI GGATC 1 cut(s) 917
AoxI GGCC 2 cut(s) 278, 390
ApeKI GCWGC 4 cut(s) 250, 253, 845, 1004
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 340
Asp718I GGTACC 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 920
AsuNHI GCTAGC 1 cut(s) 809
BanI GGYRCC 1 cut(s) 569
BauI CACGAG 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 343
BbvI GCAGC 4 cut(s) 237, 265, 857, 991
BccI CCATC 4 cut(s) 112, 560, 721, 835
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BciVI GTATCC 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 121, 202, 775
BfaI CTAG 4 cut(s) 101, 131, 189, 810
BfmI CTRYAG 3 cut(s) 75, 251, 706
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 4 cut(s) 251, 254, 846, 1005
BlpI GCTNAGC 2 cut(s) 9, 216
BlsI GCNGC 4 cut(s) 252, 255, 847, 1006
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 571
BmsI GCATC 1 cut(s) 786
BmtI GCTAGC 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 343
BplI GAGNNNNNCTC 2 cut(s) 637, 669
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 2 cut(s) 9, 216
BsaJI CCNNGG 1 cut(s) 436
Bsc4I CCNNNNNNNGG 2 cut(s) 718, 906
Bse1I ACTGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 2 cut(s) 692, 846
BseLI CCNNNNNNNGG 2 cut(s) 718, 906
BseMII CTCAG 3 cut(s) 230, 461, 467
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 4 cut(s) 237, 265, 857, 991
BsgI GTGCAG 2 cut(s) 888, 969
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 280, 392
BshNI GGYRCC 1 cut(s) 569
BslI CCNNNNNNNGG 2 cut(s) 718, 906
BsmAI GTCTC 3 cut(s) 121, 202, 775
BsmBI CGTCTC 2 cut(s) 202, 775
BsmI GAATGC 1 cut(s) 998
BsnI GGCC 2 cut(s) 280, 392
Bsp143I GATC 2 cut(s) 379, 909
Bsp1720I GCTNAGC 2 cut(s) 9, 216
BspACI CCGC 2 cut(s) 404, 648
BspANI GGCC 2 cut(s) 280, 392
BspCNI CTCAG 3 cut(s) 229, 460, 466
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 1 cut(s) 917
BspT107I GGYRCC 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 648
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 2 cut(s) 379, 909
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 263
Bst4CI ACNGT 4 cut(s) 273, 699, 885, 937
Bst6I CTCTTC 2 cut(s) 77, 119
BstAPI GCANNNNNTGC 2 cut(s) 259, 1004
BstC8I GCNNGC 3 cut(s) 6, 402, 811
BstDEI CTNAG 6 cut(s) 9, 33, 216, 447, 453, 639
BstF5I GGATG 2 cut(s) 692, 846
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 2 cut(s) 382, 912
BstMAI GTCTC 3 cut(s) 121, 202, 775
BstMBI GATC 2 cut(s) 379, 909
BstMWI GCNNNNNNNGC 3 cut(s) 10, 259, 1004
BstNSI RCATGY 1 cut(s) 487
BstSFI CTRYAG 3 cut(s) 75, 251, 706
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 237, 265, 857, 991
BstV2I GAAGAC 1 cut(s) 343
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 280, 392
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 692, 846
BtsIMutI CAGTG 2 cut(s) 99, 278
Cac8I GCNNGC 3 cut(s) 6, 402, 811
CseI GACGC 3 cut(s) 106, 590, 792
Csp6I GTAC 3 cut(s) 444, 570, 651
CviAII CATG 5 cut(s) 14, 484, 511, 946, 989
CviQI GTAC 3 cut(s) 444, 570, 651
DdeI CTNAG 6 cut(s) 9, 33, 216, 447, 453, 639
DpnI GATC 2 cut(s) 381, 911
DpnII GATC 2 cut(s) 379, 909
Eam1104I CTCTTC 2 cut(s) 77, 119
EarI CTCTTC 2 cut(s) 77, 119
Eco130I CCWWGG 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 786
EcoRI GAATTC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 2 cut(s) 202, 775
FaeI CATG 5 cut(s) 17, 487, 514, 949, 992
FatI CATG 5 cut(s) 13, 483, 510, 945, 988
FauI CCCGC 1 cut(s) 397
FblI GTMKAC 1 cut(s) 880
Fnu4HI GCNGC 4 cut(s) 251, 254, 846, 1005
FokI GGATG 2 cut(s) 699, 853
Fsp4HI GCNGC 4 cut(s) 251, 254, 846, 1005
FspBI CTAG 4 cut(s) 101, 131, 189, 810
GluI GCNGC 4 cut(s) 251, 254, 846, 1005
HaeIII GGCC 2 cut(s) 280, 392
HgaI GACGC 3 cut(s) 106, 590, 792
Hin1II CATG 5 cut(s) 17, 487, 514, 949, 992
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 185, 451, 1015
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 1 cut(s) 881
Hpy188I TCNGA 6 cut(s) 358, 384, 415, 450, 726, 747
Hpy188III TCNNGA 2 cut(s) 239, 917
Hpy8I GTNNAC 1 cut(s) 881
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 3 cut(s) 175, 583, 810
HpyCH4III ACNGT 4 cut(s) 273, 699, 885, 937
HpyCH4IV ACGT 3 cut(s) 195, 423, 442
HpyCH4V TGCA 8 cut(s) 4, 253, 262, 483, 766, 905, 986, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 259, 1004
HpyF3I CTNAG 6 cut(s) 9, 33, 216, 447, 453, 639
HpySE526I ACGT 3 cut(s) 195, 423, 442
Hsp92II CATG 5 cut(s) 17, 487, 514, 949, 992
KpnI GGTACC 1 cut(s) 573
Kzo9I GATC 2 cut(s) 379, 909
LmnI GCTCC 4 cut(s) 640, 645, 791, 868
LpnPI CCDG 5 cut(s) 294, 440, 447, 744, 944
Lsp1109I GCAGC 4 cut(s) 237, 265, 857, 991
LweI GCATC 1 cut(s) 786
MaeI CTAG 4 cut(s) 101, 131, 189, 810
MaeII ACGT 3 cut(s) 195, 423, 442
MaeIII GTNAC 4 cut(s) 94, 457, 559, 601
MalI GATC 2 cut(s) 381, 911
MbiI CCGCTC 1 cut(s) 648
MboI GATC 2 cut(s) 379, 909
MboII GAAGA 3 cut(s) 94, 136, 348
MluCI AATT 2 cut(s) 245, 359
MlyI GAGTC 2 cut(s) 194, 445
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 5 cut(s) 148, 235, 741, 858, 910
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 3 cut(s) 141, 231, 1024
MspA1I CMGCKG 1 cut(s) 46
Mva1269I GAATGC 1 cut(s) 998
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 10, 259, 1004
NdeII GATC 2 cut(s) 379, 909
NheI GCTAGC 1 cut(s) 809
NlaIII CATG 5 cut(s) 17, 487, 514, 949, 992
NlaIV GGNNCC 1 cut(s) 571
NmuCI GTSAC 2 cut(s) 94, 559
NspI RCATGY 1 cut(s) 487
PceI AGGCCT 1 cut(s) 392
PctI GAATGC 1 cut(s) 998
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 1015
PflMI CCANNNNNTGG 1 cut(s) 718
PkrI GCNGC 4 cut(s) 252, 255, 847, 1006
PleI GAGTC 2 cut(s) 193, 445
PpsI GAGTC 2 cut(s) 193, 445
PspN4I GGNNCC 1 cut(s) 571
PstI CTGCAG 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 3 cut(s) 445, 571, 652
RsaNI GTAC 3 cut(s) 444, 570, 651
SaqAI TTAA 3 cut(s) 141, 231, 1024
SatI GCNGC 4 cut(s) 251, 254, 846, 1005
Sau3AI GATC 2 cut(s) 379, 909
SchI GAGTC 2 cut(s) 194, 445
SfaNI GCATC 1 cut(s) 786
SfcI CTRYAG 3 cut(s) 75, 251, 706
Sse9I AATT 2 cut(s) 245, 359
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 2 cut(s) 404, 648
SspMI CTAG 4 cut(s) 101, 131, 189, 810
StuI AGGCCT 1 cut(s) 392
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 4 cut(s) 273, 699, 885, 937
TaiI ACGT 3 cut(s) 198, 426, 445
TaqI TCGA 3 cut(s) 179, 375, 555
TasI AATT 2 cut(s) 245, 359
TfiI GAWTC 1 cut(s) 1015
Tru1I TTAA 3 cut(s) 141, 231, 1024
Tru9I TTAA 3 cut(s) 141, 231, 1024
TscAI CASTG 2 cut(s) 99, 278
TseFI GTSAC 2 cut(s) 94, 559
TseI GCWGC 4 cut(s) 250, 253, 845, 1004
Tsp45I GTSAC 2 cut(s) 94, 559
TspDTI ATGAA 3 cut(s) 33, 565, 878
TspGWI ACGGA 3 cut(s) 589, 853, 922
TspRI CASTG 2 cut(s) 99, 278
Van91I CCANNNNNTGG 1 cut(s) 718
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 4 cut(s) 101, 131, 189, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.