FvH4_6g16980

Threonine dehydratase biosynthetic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000499
Physical Location & Seq
Reverse (-)
10846391 .. 10847590
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16980.t1

Sequence Viewer

Length: 855 bp
ATGAGTGCCGTCTTTGGTAATCCACTTGGAGATTTGGTTAATGCGGTAGGGGATAAGTTGGAGAAGTGGTTTTTCAAGTCTATCAAGACCACTAGTGACAAGACAAAACAGAAGTTGAAATTCTTCTTCGCAATAGGTTGGATAGTGTTTGTCGTTGGCACTGGATTTTTAGGGATATGGATCTGGGACGACACAACGAAGATGAATCACAATGGAGTTAATGCAACGAATCACAATGGAGCAAATGCAACGAATCACAATGGAGTCAATGCAACCCATCTGGTTAATGCAACCTATTTTTCTGTAATTTCTGCATATACGATTGGATATGGAGACTTCCATTTCTCAGCCACTGCTGGGAAGAGGTTTGCCTTAGTGTGGCTTCCTTTAGGGACTGCAATTGTTGGTAGTGCTACATCTTACTTATGTGGACACAGGCTTTGTGCGGTTTGCATCTGGAAGGATAAGAAGACCAAATCATTGATGGAGGTCGAGACAATGATAGTTCCAGGGCTAGTATTTGGGAATGGTATTCTTGTTGAAGCTAACCCAATATTGAAAAAGCATTGCCTTGAACACACAGATGCAGAAACTTCCCTAAAGTTTCTAAGTGCCATACTCTCGTCAAGAATCTATGAATGTGAGTTTGTTCAAAGGCGGGACCTAGTACCAGCCCCTGCATTTTCTCGTGCGTGCAGTTCAAGCCCAGAAGAAGTAGAGATATTACTCAATAGAGAACTTGGTTCATCCTACAAATGGAGAGGGACTTATAACTTCATGGCAAATGCACTGATTGAAAAGGAGAGGAGGGGATTCACATGCACATTTATCCTGCACGGTTGCAACCCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00290 ko01100 ko01110 ko01130 ko01200 ko01230 map00260 map00290 map01100 map01110 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP Thr_dehydrat_C

Protein Analysis

285

Amino Acids

31.49

Weight (kDa)

8.95

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 89 - 141 4.4e-08 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AciI CCGC 3 cut(s) 44, 446, 658
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 669
AfiI CCNNNNNNNGG 3 cut(s) 357, 378, 756
AgsI TTSAA 8 cut(s) 76, 118, 542, 559, 575, 653, 702, 797
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 1 cut(s) 545
AluI AGCT 1 cut(s) 545
Alw26I GTCTC 2 cut(s) 327, 488
AlwI GGATC 1 cut(s) 188
AlwNI CAGNNNCTG 2 cut(s) 353, 677
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 423, 455
Asp700I GAANNNNTTC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 661
AvaII GGWCC 1 cut(s) 661
BauI CACGAG 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 476
BccI CCATC 2 cut(s) 285, 478
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 327, 488
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 3 cut(s) 93, 515, 665
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 1 cut(s) 661
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 1 cut(s) 662
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 462, 574
BpiI GAAGAC 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 509
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 53, 83
Bsc4I CCNNNNNNNGG 3 cut(s) 357, 378, 756
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 565
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 509
BseGI GGATG 1 cut(s) 746
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 3 cut(s) 357, 378, 756
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 820
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 715, 818
BslFI GGGAC 4 cut(s) 200, 406, 674, 778
BslI CCNNNNNNNGG 3 cut(s) 357, 378, 756
BsmAI GTCTC 2 cut(s) 327, 488
BsmFI GGGAC 4 cut(s) 200, 406, 674, 778
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 3 cut(s) 44, 446, 658
BspCNI CTCAG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 662
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 687
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 694
BstDEI CTNAG 3 cut(s) 346, 373, 608
BstF5I GGATG 1 cut(s) 746
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 327, 488
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 702
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 822
BstSCI CCNGG 1 cut(s) 508
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsCI GGATG 1 cut(s) 746
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 3 cut(s) 159, 351, 788
Cac8I GCNNGC 1 cut(s) 694
CaiI CAGNNNCTG 2 cut(s) 353, 677
Cfr13I GGNCC 1 cut(s) 661
Csp6I GTAC 1 cut(s) 668
CviAII CATG 2 cut(s) 778, 819
CviJI RGCY 7 cut(s) 350, 382, 439, 514, 545, 674, 705
CviKI_1 RGCY 7 cut(s) 350, 382, 439, 514, 545, 674, 705
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 3 cut(s) 346, 373, 608
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 508
FaeI CATG 2 cut(s) 781, 822
FaqI GGGAC 4 cut(s) 200, 406, 674, 778
FatI CATG 2 cut(s) 777, 818
FauI CCCGC 1 cut(s) 651
FokI GGATG 1 cut(s) 733
FspBI CTAG 3 cut(s) 93, 515, 665
GsaI CCCAGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 781, 822
HinfI GANTC 6 cut(s) 205, 229, 253, 264, 630, 813
Hpy166II GTNNAC 1 cut(s) 431
Hpy188III TCNNGA 4 cut(s) 85, 457, 493, 627
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 1 cut(s) 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 702
HpyF3I CTNAG 3 cut(s) 346, 373, 608
Hsp92II CATG 2 cut(s) 781, 822
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 239
LweI GCATC 2 cut(s) 462, 574
MaeI CTAG 3 cut(s) 93, 515, 665
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 6 cut(s) 115, 118, 211, 373, 481, 722
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 1 cut(s) 180
MluCI AATT 3 cut(s) 119, 306, 399
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 39, 119
MnlI CCTC 5 cut(s) 357, 481, 755, 798, 801
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 3 cut(s) 39, 219, 285
MslI CAYNNNNRTG 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 510
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 702
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 781, 822
NlaIV GGNNCC 1 cut(s) 662
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 5 cut(s) 205, 229, 253, 630, 813
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 661
PsiI TTATAA 1 cut(s) 771
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 662
PspPI GGNCC 1 cut(s) 661
PspPPI RGGWCCY 1 cut(s) 661
PstNI CAGNNNCTG 2 cut(s) 353, 677
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 3 cut(s) 39, 219, 285
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 510
SetI ASST 6 cut(s) 139, 296, 368, 492, 547, 666
SfaNI GCATC 2 cut(s) 462, 574
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 582
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 3 cut(s) 119, 306, 399
SsiI CCGC 3 cut(s) 44, 446, 658
SspI AATATT 1 cut(s) 555
SspMI CTAG 3 cut(s) 93, 515, 665
StyD4I CCNGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 839
TaqI TCGA 1 cut(s) 492
TasI AATT 3 cut(s) 119, 306, 399
TfiI GAWTC 5 cut(s) 205, 229, 253, 630, 813
Tru1I TTAA 3 cut(s) 39, 219, 285
Tru9I TTAA 3 cut(s) 39, 219, 285
TscAI CASTG 3 cut(s) 166, 358, 795
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 4 cut(s) 218, 651, 735, 766
TspRI CASTG 3 cut(s) 166, 358, 795
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 822
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 3 cut(s) 93, 515, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.