Rh1BG021300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000499
Physical Location & Seq
Reverse (-)
2737599 .. 2738851
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG021300.1

Sequence Viewer

Length: 462 bp
ATGGGCCTGGTGGTCACAAATGCTGGGTTGGTCGCACAAAGCAAAACTTCCGATTTCAGTCTCTCTTATCAGCTTCTAATAAGTAGGAGCAGGATGTCAAGCAAGAACGAAGAGGTTTCGAAGCTTAAAAACAAGGTAAAAGAGATATTTGACAGCAGGCAAGTTCAATATGATGAATATAAGAAATATAAGGAAATGCGGCTGATAGAAACAGAGAGTGTTTTGGATGAGCTAGAGAAAAGTTTGTCTGATGAATCGGACGACATTAACGTGTACAAAAGTCGCGTAGAGATGGAGAAGACACTTGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTATTCTCGAACCGAAGGAGTCTAGTGATGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCTTGGTGGACAGAGTGGACAGAAAATTCGAAAAAGGAGAGGGTCACAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.52

Weight (kDa)

5.98

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 426
AfaI GTAC 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 2 cut(s) 167, 308
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 5 cut(s) 73, 124, 232, 389, 394
AluI AGCT 5 cut(s) 73, 124, 232, 389, 394
Alw26I GTCTC 2 cut(s) 65, 376
AoxI GGCC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 2 cut(s) 119, 430
BbsI GAAGAC 1 cut(s) 305
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 65, 376
BfaI CTAG 2 cut(s) 233, 363
BisI GCNGC 1 cut(s) 200
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 390
Bpu14I TTCGAA 2 cut(s) 119, 430
BseBI CCWGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 99, 232
BseMII CTCAG 1 cut(s) 404
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 6
BsmAI GTCTC 2 cut(s) 65, 376
BsnI GGCC 1 cut(s) 6
Bsp119I TTCGAA 2 cut(s) 119, 430
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 397
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 403
BspFNI CGCG 1 cut(s) 285
BspT104I TTCGAA 2 cut(s) 119, 430
BsrGI TGTACA 1 cut(s) 273
BssMI GATC 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 273
BstBI TTCGAA 2 cut(s) 119, 430
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 99, 232
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 2 cut(s) 65, 376
BstMBI GATC 1 cut(s) 397
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstUI CGCG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 2 cut(s) 99, 232
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 274
CviJI RGCY 8 cut(s) 6, 73, 124, 202, 232, 332, 389, 394
CviKI_1 RGCY 8 cut(s) 6, 73, 124, 202, 232, 332, 389, 394
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 6
FaiI YATR 3 cut(s) 171, 180, 189
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 378, 410
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 2 cut(s) 106, 239
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 2 cut(s) 233, 363
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 254, 359
Hpy166II GTNNAC 3 cut(s) 274, 410, 419
Hpy188I TCNGA 3 cut(s) 52, 250, 259
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 3 cut(s) 274, 410, 419
HpyAV CCTTC 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 9, 20, 76, 142
MaeI CTAG 2 cut(s) 233, 363
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 13, 444
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 2 cut(s) 122, 310
MluCI AATT 1 cut(s) 426
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 3 cut(s) 106, 322, 434
MseI TTAA 3 cut(s) 126, 267, 315
MslI CAYNNNNRTG 2 cut(s) 269, 405
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 285
NdeII GATC 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 13, 444
NspV TTCGAA 2 cut(s) 119, 430
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 2 cut(s) 269, 405
SaqAI TTAA 3 cut(s) 126, 267, 315
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 8
SetI ASST 8 cut(s) 75, 117, 126, 138, 234, 273, 391, 396
SfuI TTCGAA 2 cut(s) 119, 430
SmiMI CAYNNNNRTG 2 cut(s) 269, 405
Sse9I AATT 1 cut(s) 426
SsiI CCGC 1 cut(s) 199
SspMI CTAG 2 cut(s) 233, 363
StyD4I CCNGG 1 cut(s) 6
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 119, 348, 430
TasI AATT 1 cut(s) 426
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 3 cut(s) 126, 267, 315
Tru9I TTAA 3 cut(s) 126, 267, 315
TseFI GTSAC 2 cut(s) 13, 444
Tsp45I GTSAC 2 cut(s) 13, 444
TspDTI ATGAA 2 cut(s) 189, 267
XapI RAATTY 1 cut(s) 426
XspI CTAG 2 cut(s) 233, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.