Rh1DG020200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Reverse (-)
3191459 .. 3191962
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG020200.1

Sequence Viewer

Length: 408 bp
ATGAGTGATGATGAAGAGGGATGGCTAGACTTCCGGGTGGACTGTGAGCGGTTGATTAGGGAGCGGGCTACACTTGTAGGAGAGCAGCATGAAATTGAAATTGAGGAAGCGAGAGAGGAAGAGATTCAGACTGAGGAAGAGACTATTCAGTGGTTGGAGTTGAGGAATAGAGAAGAGAGGAAATTGATGGGAATGCGAGCCAAAATGTCGGTAGGATCTTCCGATGCAAAGGGTAAGGTTGATTTGGAAGACATTCAGCTTGTTTGGGAAGGCTTTAGGTTGATGGGCAAGGGCTCCATGTTGATGGACATGAGATTGAGGAGGATGGGAAATAGATTGAGGAAGATGGGAACGCTATTCAGGTTGATCAGCATTGTGAGTCGTTGGAGAATCAAATTAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

16.16

Weight (kDa)

5.66

Isoelectric Point (pI)

62.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 49, 64
AciI CCGC 2 cut(s) 49, 64
AclWI GGATC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 85
Asp700I GAANNNNTTC 2 cut(s) 123, 252
AsuC2I CCSGG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 97
BccI CCATC 6 cut(s) 15, 181, 277, 298, 319, 340
BclI TGATCA 1 cut(s) 366
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 26, 330
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 215, 366
BspACI CCGC 2 cut(s) 49, 64
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 223
BsrBI CCGCTC 2 cut(s) 49, 64
BssMI GATC 2 cut(s) 215, 366
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 4 cut(s) 9, 114, 132, 168
BstC8I GCNNGC 2 cut(s) 66, 198
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 26, 330
BstKTI GATC 2 cut(s) 218, 369
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 215, 366
BstSCI CCNGG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 215
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 215
BtsCI GGATG 2 cut(s) 26, 330
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 66, 198
CviAII CATG 3 cut(s) 89, 298, 310
CviJI RGCY 6 cut(s) 25, 68, 200, 259, 273, 294
CviKI_1 RGCY 6 cut(s) 25, 68, 200, 259, 273, 294
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 217, 368
DpnII GATC 2 cut(s) 215, 366
Eam1104I CTCTTC 4 cut(s) 9, 114, 132, 168
EarI CTCTTC 4 cut(s) 9, 114, 132, 168
Eco24I GRGCYC 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 296
FaeI CATG 3 cut(s) 92, 301, 313
FaiI YATR 3 cut(s) 90, 299, 311
FatI CATG 3 cut(s) 88, 297, 309
FauI CCCGC 1 cut(s) 57
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 2 cut(s) 33, 337
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 86
HapII CCGG 1 cut(s) 34
Hin1II CATG 3 cut(s) 92, 301, 313
HinfI GANTC 3 cut(s) 124, 379, 390
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 129, 223
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 3 cut(s) 92, 301, 313
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 2 cut(s) 215, 366
LmnI GCTCC 2 cut(s) 61, 299
LpnPI CCDG 2 cut(s) 47, 346
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 26
MalI GATC 2 cut(s) 217, 368
MbiI CCGCTC 2 cut(s) 49, 64
MboI GATC 2 cut(s) 215, 366
MboII GAAGA 7 cut(s) 26, 131, 149, 185, 210, 260, 355
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 5 cut(s) 93, 99, 182, 395, 403
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 2 cut(s) 135, 365
MnlI CCTC 9 cut(s) 10, 97, 109, 127, 156, 171, 312, 315, 333
MroXI GAANNNNTTC 2 cut(s) 123, 252
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 35
NdeII GATC 2 cut(s) 215, 366
NlaIII CATG 3 cut(s) 92, 301, 313
NlaIV GGNNCC 1 cut(s) 295
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 2 cut(s) 123, 252
PfeI GAWTC 2 cut(s) 124, 390
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PspN4I GGNNCC 1 cut(s) 295
PsuI RGATCY 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 215, 366
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 296
SetI ASST 4 cut(s) 240, 261, 281, 365
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 5 cut(s) 93, 99, 182, 395, 403
SsiI CCGC 2 cut(s) 49, 64
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 44
TasI AATT 5 cut(s) 93, 99, 182, 395, 403
TfiI GAWTC 2 cut(s) 124, 390
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 1 cut(s) 155
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 27, 105
TspRI CASTG 1 cut(s) 155
XmnI GAANNNNTTC 2 cut(s) 123, 252
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.