Rh1DG017700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Reverse (-)
2874389 .. 2874610
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG017700.1

Sequence Viewer

Length: 222 bp
ATGGGAATGCGAGCCAAAATGTTGGTAGGATCTTCCGATGCAGAGGGTAAGGTTGATTTGGAAGACATTCAGCTTGTTTGGGAAGGCTTTAGGTTGATGGGCAAGGGCTCCATGTTGATGGACATGAGATTGAGGAGGATGGGCAATAGATTGAGGAAGATGGGAACGCTATTTAGGTTGATCAGCATTGGGAGTCGTTGGAGAATCAAATTAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.5

Weight (kDa)

11.6

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 4 cut(s) 91, 112, 133, 154
BclI TGATCA 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 69
BseGI GGATG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 148
BsmI GAATGC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 29, 180
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 37
BssMI GATC 2 cut(s) 29, 180
BstC8I GCNNGC 1 cut(s) 12
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 2 cut(s) 32, 183
BstMBI GATC 2 cut(s) 29, 180
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 2 cut(s) 22, 118
BstYI RGATCY 1 cut(s) 29
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 12
CviAII CATG 2 cut(s) 112, 124
CviJI RGCY 4 cut(s) 14, 73, 87, 108
CviKI_1 RGCY 4 cut(s) 14, 73, 87, 108
DpnI GATC 2 cut(s) 31, 182
DpnII GATC 2 cut(s) 29, 180
Eco24I GRGCYC 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 2 cut(s) 115, 127
FaiI YATR 2 cut(s) 113, 125
FatI CATG 2 cut(s) 111, 123
FbaI TGATCA 1 cut(s) 180
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 110
Hin1II CATG 2 cut(s) 115, 127
HinfI GANTC 2 cut(s) 193, 204
Hpy188I TCNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 2 cut(s) 115, 127
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 2 cut(s) 29, 180
LmnI GCTCC 1 cut(s) 113
LweI GCATC 1 cut(s) 28
MalI GATC 2 cut(s) 31, 182
MboI GATC 2 cut(s) 29, 180
MboII GAAGA 3 cut(s) 24, 74, 169
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 209, 217
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 4 cut(s) 37, 126, 129, 147
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 12
NdeII GATC 2 cut(s) 29, 180
NlaIII CATG 2 cut(s) 115, 127
NlaIV GGNNCC 1 cut(s) 109
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 204
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 2 cut(s) 29, 180
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 54, 75, 95, 179
SfaNI GCATC 1 cut(s) 28
SgeI CNNG 5 cut(s) 23, 86, 115, 124, 136
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 2 cut(s) 209, 217
TasI AATT 2 cut(s) 209, 217
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.