Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000499

Physical Location & Seq

Genomic Coordinates Forward (+)

19042164 .. 19042771

Gene Structure 608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGGTGTCCGTGTTCACTATCGGGTATGGTGATGTTACACCACTCACACCAGCCGCCCATGTGATCGCCATCGTTACTGACTTGATTGCATATTGTTTTATATCTGTTATAGTTAGTGATGCCATAGATGACAATATAGGAGCACTATATGTCCACAAGGAGATCAACAAGCTTGATTCGATATATTTGGTTTTGATGACTCTGTTGACTATAGGTTATGGGGACACATCATTTAGGATGCAAAATGGAAGACTGTTTGCTATATTTTGGATATCTTTTTTCTTACCTATCTTTGAGATGGCAGTTAGTTTAGGGATTCGAGATGCCATACATGGTTGGTTTGCAGCTACCCCTCCGGTTCCAATAAAATTTGAATGGAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 Ion_trans_2

Protein Analysis

130

Amino Acids

14.4

Weight (kDa)

4.95

Isoelectric Point (pI)

16.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	3 - 43	1e-06	Ion channel
Ion_trans_2	PF07885	55 - 105	3.9e-12	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02510
fragaria_vesca	FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica	MD05G1161500.v1.1
pyrus_communis	pycom05g15160
rosa_chinensis	RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata	RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora	Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa	Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha	Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana	Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	2 cut(s)	175, 350
AluI	AGCT	2 cut(s)	175, 350
Alw21I	GWGCWC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	2 cut(s)	80, 295
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	57, 348
BlsI	GCNGC	2 cut(s)	58, 349
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	3 cut(s)	112, 231, 316
BpiI	GAAGAC	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	71
BseGI	GGATG	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	66, 165
BspACI	CCGC	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	363
BssMI	GATC	2 cut(s)	66, 165
Bst4CI	ACNGT	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	69, 168
BstMBI	GATC	2 cut(s)	66, 165
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	246
CviAII	CATG	2 cut(s)	62, 335
CviJI	RGCY	3 cut(s)	56, 175, 350
CviKI_1	RGCY	3 cut(s)	56, 175, 350
DpnI	GATC	2 cut(s)	68, 167
DpnII	GATC	2 cut(s)	66, 165
Eco32I	GATATC	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	276
FaeI	CATG	2 cut(s)	65, 338
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	61, 334
Fnu4HI	GCNGC	2 cut(s)	57, 348
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	57, 348
GluI	GCNGC	2 cut(s)	57, 348
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	65, 338
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	179, 202, 319
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	18, 157, 210
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	3 cut(s)	18, 157, 210
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	92, 244, 347
Hsp92II	CATG	2 cut(s)	65, 338
Kzo9I	GATC	2 cut(s)	66, 165
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	2 cut(s)	66, 372
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	3 cut(s)	112, 231, 316
MaeIII	GTNAC	2 cut(s)	37, 76
MalI	GATC	2 cut(s)	68, 167
MboI	GATC	2 cut(s)	66, 165
MboII	GAAGA	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	366
MspI	CCGG	1 cut(s)	359
NdeII	GATC	2 cut(s)	66, 165
NlaIII	CATG	2 cut(s)	65, 338
NlaIV	GGNNCC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	179, 319
PkrI	GCNGC	2 cut(s)	58, 349
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	363
SatI	GCNGC	2 cut(s)	57, 348
Sau3AI	GATC	2 cut(s)	66, 165
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	9, 177, 220, 292, 352
SfaNI	GCATC	3 cut(s)	112, 231, 316
SfcI	CTRYAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	182, 322
TasI	AATT	1 cut(s)	371
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	179, 319
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.