Rmu_sc0005604.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005604.1
OG0000499
Physical Location & Seq
Reverse (-)
901 .. 2472
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005604.1_g000001.1.cds

Sequence Viewer

Length: 801 bp
atgactcgtaaacttaacagtagcccaattatatctgttagctttacttgctcacgacggacacttgggactcctccctccctccctctgacaaccacccatcgatcccaaacactcctcaccgcggccaccacctctaacccgacccggtcccgaatcccagtaatcttgttccggattcagctgatagacgccaagaactgggcttcaagtcccatccgggtgtgcgaccgacaacgaggtaggggcaggatgtcaagcaggaacgaagaagttttgaagcttaaaaacaagattattgaatgccaagaggaaacgctgcggctattgcaggagaaacaggggtggcctgccaaatctaatcttctggaacagacaaaagaaagagctgtagctgagttgacaagacaatcgaccgaaacatctgaatttgagaaggaactcatcgatctgtacaaggccttgaagcgtaaggagaggtctgaaaccaatctaaaagatatttttgacgagacgcaagcttcgcatgaggaacataggaaagctatggaaaagaagctgacagaagtagagtgtacgttggatactgtagataagagattgtcagtgatgctagaaaatcgcgtagagatggagaagagactagaaaatcttaatgttttctatgaggctgtgtattctactctcaaatcgaagaagtctaacggtgtctctcttgtcaaagaagctcagcttgatcatcctgatggactgaatggacccaaaatgcaaaaaaggagagggtcgaagaagtctcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.58

Weight (kDa)

9.69

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AccII CGCG 2 cut(s) 125, 624
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 3 cut(s) 123, 125, 322
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 455, 577
AfiI CCNNNNNNNGG 2 cut(s) 124, 201
AgsI TTSAA 4 cut(s) 210, 280, 302, 466
Alw26I GTCTC 3 cut(s) 506, 634, 715
AlwI GGATC 1 cut(s) 99
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 3 cut(s) 126, 347, 459
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
AspS9I GGNCC 2 cut(s) 150, 758
AsuC2I CCSGG 2 cut(s) 148, 221
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 2 cut(s) 150, 758
BbvI GCAGC 1 cut(s) 306
BccI CCATC 4 cut(s) 108, 224, 625, 740
BciVI GTATCC 1 cut(s) 577
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 2 cut(s) 148, 221
BcoDI GTCTC 3 cut(s) 506, 634, 715
BfaI CTAG 2 cut(s) 614, 644
BfmI CTRYAG 2 cut(s) 390, 588
BfuI GTATCC 1 cut(s) 577
BisI GCNGC 3 cut(s) 126, 320, 323
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 3 cut(s) 127, 321, 324
Bme1390I CCNGG 2 cut(s) 148, 221
Bme18I GGWCC 2 cut(s) 150, 758
BmgT120I GGNCC 2 cut(s) 150, 758
BmiI GGNNCC 2 cut(s) 152, 760
BmrFI CCNGG 2 cut(s) 148, 221
BmrI ACTGGG 2 cut(s) 155, 211
BmsI GCATC 1 cut(s) 600
BmuI ACTGGG 2 cut(s) 155, 211
Bpu1102I GCTNAGC 1 cut(s) 729
BpuMI CCSGG 2 cut(s) 148, 221
Bsa29I ATCGAT 2 cut(s) 103, 447
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 201
Bse1I ACTGG 2 cut(s) 161, 206
BseAI TCCGGA 1 cut(s) 174
BseCI ATCGAT 2 cut(s) 103, 447
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 3 cut(s) 216, 258, 739
BseLI CCNNNNNNNGG 2 cut(s) 124, 201
BseMII CTCAG 2 cut(s) 387, 743
BseNI ACTGG 2 cut(s) 161, 206
BseRI GAGGAG 2 cut(s) 63, 107
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 125, 624
Bsh1285I CGRYCG 2 cut(s) 232, 417
BshFI GGCC 3 cut(s) 128, 349, 461
BshVI ATCGAT 2 cut(s) 103, 447
BsiEI CGRYCG 2 cut(s) 232, 417
BsiSI CCGG 3 cut(s) 148, 175, 220
BslFI GGGAC 3 cut(s) 82, 136, 198
BslI CCNNNNNNNGG 2 cut(s) 124, 201
BsmAI GTCTC 3 cut(s) 506, 634, 715
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 3 cut(s) 82, 136, 198
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 3 cut(s) 128, 349, 461
Bsp13I TCCGGA 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 3 cut(s) 104, 448, 736
Bsp1720I GCTNAGC 1 cut(s) 729
BspACI CCGC 3 cut(s) 123, 125, 322
BspANI GGCC 3 cut(s) 128, 349, 461
BspCNI CTCAG 2 cut(s) 388, 742
BspDI ATCGAT 2 cut(s) 103, 447
BspEI TCCGGA 1 cut(s) 174
BspFNI CGCG 2 cut(s) 125, 624
BspLI GGNNCC 2 cut(s) 152, 760
BspPI GGATC 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 2 cut(s) 161, 206
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 104, 448, 736
BssNI GRCGYC 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 20, 589, 707
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 1 cut(s) 192
BstAUI TGTACA 1 cut(s) 453
BstC8I GCNNGC 2 cut(s) 351, 519
BstDEI CTNAG 2 cut(s) 396, 729
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 216, 258, 739
BstFNI CGCG 2 cut(s) 125, 624
BstKTI GATC 3 cut(s) 107, 451, 739
BstMAI GTCTC 3 cut(s) 506, 634, 715
BstMBI GATC 3 cut(s) 104, 448, 736
BstMCI CGRYCG 2 cut(s) 232, 417
BstMWI GCNNNNNNNGC 3 cut(s) 48, 328, 523
BstSCI CCNGG 2 cut(s) 146, 219
BstSFI CTRYAG 2 cut(s) 390, 588
BstUI CGCG 2 cut(s) 125, 624
BstV1I GCAGC 1 cut(s) 306
Bsu15I ATCGAT 2 cut(s) 103, 447
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 3 cut(s) 128, 349, 461
BsuTUI ATCGAT 2 cut(s) 103, 447
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 3 cut(s) 216, 258, 739
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 351, 519
Cfr13I GGNCC 2 cut(s) 150, 758
Cfr42I CCGCGG 1 cut(s) 126
ClaI ATCGAT 2 cut(s) 103, 447
CseI GACGC 2 cut(s) 200, 523
Csp6I GTAC 2 cut(s) 454, 576
CviAII CATG 1 cut(s) 527
CviQI GTAC 2 cut(s) 454, 576
DdeI CTNAG 2 cut(s) 396, 729
DpnI GATC 3 cut(s) 106, 450, 738
DpnII GATC 3 cut(s) 104, 448, 736
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco147I AGGCCT 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 150, 758
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 1 cut(s) 530
FaiI YATR 5 cut(s) 32, 528, 537, 548, 666
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 3 cut(s) 82, 136, 198
FatI CATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 126, 320, 323
FokI GGATG 3 cut(s) 203, 265, 726
Fsp4HI GCNGC 3 cut(s) 126, 320, 323
FspBI CTAG 2 cut(s) 614, 644
GluI GCNGC 3 cut(s) 126, 320, 323
HaeIII GGCC 3 cut(s) 128, 349, 461
HapII CCGG 3 cut(s) 148, 175, 220
HgaI GACGC 2 cut(s) 200, 523
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 530
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 2 cut(s) 281, 519
HinfI GANTC 4 cut(s) 4, 70, 156, 178
HpaII CCGG 3 cut(s) 148, 175, 220
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 3 cut(s) 11, 402, 576
Hpy188I TCNGA 3 cut(s) 90, 427, 484
Hpy188III TCNNGA 5 cut(s) 54, 153, 175, 368, 743
Hpy8I GTNNAC 3 cut(s) 11, 402, 576
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 3 cut(s) 20, 589, 707
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 2 cut(s) 331, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 328, 523
HpyF3I CTNAG 2 cut(s) 396, 729
HpySE526I ACGT 1 cut(s) 578
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 736
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 3 cut(s) 104, 448, 736
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 600
MaeI CTAG 2 cut(s) 614, 644
MaeII ACGT 1 cut(s) 578
MalI GATC 3 cut(s) 106, 450, 738
MboI GATC 3 cut(s) 104, 448, 736
MboII GAAGA 5 cut(s) 281, 356, 649, 706, 799
MluCI AATT 2 cut(s) 27, 428
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 561
MroI TCCGGA 1 cut(s) 174
MseI TTAA 3 cut(s) 15, 285, 654
MslI CAYNNNNRTG 2 cut(s) 221, 744
MspA1I CMGCKG 2 cut(s) 125, 184
MspI CCGG 3 cut(s) 148, 175, 220
MspR9I CCNGG 2 cut(s) 148, 221
Mva1269I GAATGC 1 cut(s) 308
MvnI CGCG 2 cut(s) 125, 624
MwoI GCNNNNNNNGC 3 cut(s) 48, 328, 523
NciI CCSGG 2 cut(s) 148, 221
NdeII GATC 3 cut(s) 104, 448, 736
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 2 cut(s) 152, 760
PceI AGGCCT 1 cut(s) 461
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 156, 178
PflFI GACNNNGTC 1 cut(s) 148
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 3 cut(s) 127, 321, 324
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 152, 760
PspPI GGNCC 2 cut(s) 150, 758
PsyI GACNNNGTC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 2 cut(s) 455, 577
RsaNI GTAC 2 cut(s) 454, 576
RseI CAYNNNNRTG 2 cut(s) 221, 744
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 3 cut(s) 15, 285, 654
SatI GCNGC 3 cut(s) 126, 320, 323
Sau3AI GATC 3 cut(s) 104, 448, 736
Sau96I GGNCC 2 cut(s) 150, 758
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 148, 221
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 2 cut(s) 390, 588
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SinI GGWCC 2 cut(s) 150, 758
SmiMI CAYNNNNRTG 2 cut(s) 221, 744
Sse9I AATT 2 cut(s) 27, 428
SseBI AGGCCT 1 cut(s) 461
SsiI CCGC 3 cut(s) 123, 125, 322
SspMI CTAG 2 cut(s) 614, 644
StuI AGGCCT 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 146, 219
TaaI ACNGT 3 cut(s) 20, 589, 707
TaiI ACGT 1 cut(s) 581
TaqI TCGA 5 cut(s) 103, 413, 447, 692, 785
TaqII GACCGA 2 cut(s) 246, 431
TasI AATT 2 cut(s) 27, 428
TatI WGTACW 1 cut(s) 453
TauI GCSGC 2 cut(s) 128, 325
TfiI GAWTC 2 cut(s) 156, 178
Tru1I TTAA 3 cut(s) 15, 285, 654
Tru9I TTAA 3 cut(s) 15, 285, 654
TscAI CASTG 1 cut(s) 612
TseI GCWGC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 612
Tth111I GACNNNGTC 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 150, 758
XapI RAATTY 1 cut(s) 428
XspI CTAG 2 cut(s) 614, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.