Rh1DG016300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Forward (+)
2717571 .. 2717959
389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG016300.1

Sequence Viewer

Length: 219 bp
ATGACTGATGAGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTAAAAAATCTTGATGTCTTCTGTGCGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGCTTAATCATCCTGTTGGACAGAATGGACAGAAAATGCGAAGAAGGCGAGTCTCGAAGAAGTCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.28

Weight (kDa)

10.02

Isoelectric Point (pI)

72.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AciI CCGC 1 cut(s) 86
AluBI AGCT 2 cut(s) 146, 151
AluI AGCT 2 cut(s) 146, 151
Alw26I GTCTC 3 cut(s) 52, 133, 205
BbsI GAAGAC 1 cut(s) 70
BccI CCATC 1 cut(s) 43
BcoDI GTCTC 3 cut(s) 52, 133, 205
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 87
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 147
BseGI GGATG 1 cut(s) 157
BsmAI GTCTC 3 cut(s) 52, 133, 205
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 157
BstMAI GTCTC 3 cut(s) 52, 133, 205
BstMWI GCNNNNNNNGC 2 cut(s) 39, 193
BstV2I GAAGAC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 157
CseI GACGC 1 cut(s) 48
CviJI RGCY 3 cut(s) 89, 146, 151
CviKI_1 RGCY 3 cut(s) 89, 146, 151
DdeI CTNAG 1 cut(s) 147
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
FaiI YATR 2 cut(s) 44, 92
FalI AAGNNNNNCTT 2 cut(s) 135, 167
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 87
HgaI GACGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 5 cut(s) 11, 18, 107, 116, 198
Hpy188III TCNNGA 5 cut(s) 15, 71, 104, 202, 213
HpyAV CCTTC 3 cut(s) 106, 143, 186
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 193
HpyF3I CTNAG 1 cut(s) 147
LpnPI CCDG 1 cut(s) 174
MaeI CTAG 1 cut(s) 120
MboII GAAGA 4 cut(s) 67, 70, 201, 217
MlyI GAGTC 4 cut(s) 20, 27, 125, 207
MmeI TCCRAC 1 cut(s) 145
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 39, 193
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 4 cut(s) 19, 26, 124, 206
PpsI GAGTC 4 cut(s) 19, 26, 124, 206
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 87
SchI GAGTC 4 cut(s) 20, 27, 125, 207
SetI ASST 2 cut(s) 148, 153
SgeI CNNG 7 cut(s) 27, 83, 116, 132, 173, 209, 214
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 4 cut(s) 105, 110, 203, 214
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 39
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.