Rmu_sc0017515.1_g000001

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017515.1
OG0000499
Physical Location & Seq
Reverse (-)
17466 .. 17995
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017515.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atggctagcgtttatatcttagagtggctgcacctagctggtggatctccatctccatctccatctccttccactatgttacctactgatgcatacgcatgggtcctctttgttgacatattccacctctcagttatgatgatgaataccactggatttggagatttcgccttcactactgcatctgggagagcgtttgccatagtatgggttcctttctctactatagtgtttatggttgcgagtacgttcttggctcagacttttttgttctatcttgcacgtatcattggagcttgtcccaggggatccatcgtcactgatgagcatggaggatccagtttcgtcattcttggatacatttgtcatgttgatgatagtattagtatttctttccggacagataactatttgaggttgctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

141

Amino Acids

15.46

Weight (kDa)

5.27

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 396
AclWI GGATC 5 cut(s) 52, 303, 316, 330, 343
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 207
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 2 cut(s) 38, 296
AluI AGCT 2 cut(s) 38, 296
AlwI GGATC 5 cut(s) 52, 303, 316, 330, 343
Aor13HI TCCGGA 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 103
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 103
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BamHI GGATCC 2 cut(s) 308, 335
BbvI GCAGC 1 cut(s) 15
BccI CCATC 4 cut(s) 58, 64, 70, 320
BciT130I CCWGG 1 cut(s) 304
BciVI GTATCC 1 cut(s) 350
BfaI CTAG 2 cut(s) 6, 35
BfmI CTRYAG 2 cut(s) 225, 422
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 4 cut(s) 104, 213, 310, 337
BmrFI CCNGG 1 cut(s) 304
BmsI GCATC 2 cut(s) 79, 191
BmtI GCTAGC 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 302, 303
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 157, 339
Bse8I GATNNNNATC 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 396
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 302, 303
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 144, 272
BseNI ACTGG 2 cut(s) 157, 339
BseXI GCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 285
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 3 cut(s) 44, 308, 335
BspCNI CTCAG 2 cut(s) 143, 271
BspEI TCCGGA 1 cut(s) 396
BspLI GGNNCC 4 cut(s) 104, 213, 310, 337
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 5 cut(s) 52, 303, 316, 330, 343
BsrI ACTGG 2 cut(s) 157, 339
BssECI CCNNGG 2 cut(s) 302, 303
BssMI GATC 3 cut(s) 44, 308, 335
Bst2UI CCWGG 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 19, 130, 258
BstKTI GATC 3 cut(s) 47, 311, 338
BstMBI GATC 3 cut(s) 44, 308, 335
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstSFI CTRYAG 2 cut(s) 225, 422
BstV1I GCAGC 1 cut(s) 15
BstX2I RGATCY 3 cut(s) 44, 308, 335
BstYI RGATCY 3 cut(s) 44, 308, 335
BsuI GTATCC 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 150, 318
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 3 cut(s) 99, 329, 368
CviJI RGCY 5 cut(s) 5, 28, 38, 257, 296
CviKI_1 RGCY 5 cut(s) 5, 28, 38, 257, 296
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 3 cut(s) 19, 130, 258
DpnI GATC 3 cut(s) 46, 310, 337
DpnII GATC 3 cut(s) 44, 308, 335
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 94
FaeI CATG 3 cut(s) 102, 332, 371
FaqI GGGAC 1 cut(s) 285
FatI CATG 3 cut(s) 98, 328, 367
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 6, 35
GluI GCNGC 1 cut(s) 29
HapII CCGG 1 cut(s) 397
Hin1II CATG 3 cut(s) 102, 332, 371
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 397
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 78, 181
HpyCH4IV ACGT 2 cut(s) 248, 283
HpyCH4V TGCA 4 cut(s) 31, 92, 182, 281
HpyF3I CTNAG 3 cut(s) 19, 130, 258
HpySE526I ACGT 2 cut(s) 248, 283
Hsp92II CATG 3 cut(s) 102, 332, 371
Kpn2I TCCGGA 1 cut(s) 396
Kzo9I GATC 3 cut(s) 44, 308, 335
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 7 cut(s) 24, 138, 171, 289, 316, 352, 410
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 2 cut(s) 79, 191
MaeI CTAG 2 cut(s) 6, 35
MaeII ACGT 2 cut(s) 248, 283
MaeIII GTNAC 2 cut(s) 78, 316
MalI GATC 3 cut(s) 46, 310, 337
MboI GATC 3 cut(s) 44, 308, 335
MflI RGATCY 3 cut(s) 44, 308, 335
MnlI CCTC 4 cut(s) 116, 137, 326, 408
Mph1103I ATGCAT 1 cut(s) 94
MroI TCCGGA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 97, 372
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
NdeII GATC 3 cut(s) 44, 308, 335
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 102, 332, 371
NlaIV GGNNCC 4 cut(s) 104, 213, 310, 337
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 94
PasI CCCWGGG 1 cut(s) 303
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 284
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 4 cut(s) 104, 213, 310, 337
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 3 cut(s) 44, 308, 335
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 2 cut(s) 97, 372
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 44, 308, 335
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 304
SetI ASST 8 cut(s) 36, 40, 85, 129, 251, 286, 298, 419
SfaNI GCATC 2 cut(s) 79, 191
SfcI CTRYAG 2 cut(s) 225, 422
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 97, 372
SspMI CTAG 2 cut(s) 6, 35
StyD4I CCNGG 1 cut(s) 302
TaiI ACGT 2 cut(s) 251, 286
TscAI CASTG 2 cut(s) 157, 325
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 2 cut(s) 157, 325
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 103
XspI CTAG 2 cut(s) 6, 35
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.