Rw1G001370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000499
Physical Location & Seq
Forward (+)
2300346 .. 2301390
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001370.1

Sequence Viewer

Length: 519 bp
ATGTCAAGCAAGAACGAAGAGGTTTCAAAGCTTAAAAACAAGCTATTGCAGGAGAAACAGTGGTGGCCTGACAAATCTAAACTTATGGAACGGACAAAAGAAAGAGTTGTAGCTTATCTGAGAAGACATTTGGTCCAAACATCTGAATTTGAAAAGGAACTCAACGATCTGAACAATGCCTTGAAACGTGAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACACGATGCAAGCTGAGGATGATGAATATAGGAAAGCTAAGGAAAAACAGCTGACAGAAGTAGAGTGTTCGTTGGATACTGTAGAGAAGAGATTGTCAGTGTCGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTGTGAGGGTGTGTATTCTACTCTCAAATCGAAGGAGTCTAGCCGTGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGGTGGACATAATGGACAGAAAACGCGAAAAAGACGAGGTTCGAAGAAGTCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

20.27

Weight (kDa)

9.21

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 342, 487
AcsI RAATTY 1 cut(s) 146
AgsI TTSAA 3 cut(s) 27, 152, 184
AhdI GACNNNNNGTC 1 cut(s) 131
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 8 cut(s) 31, 43, 113, 239, 263, 277, 446, 451
AluI AGCT 8 cut(s) 31, 43, 113, 239, 263, 277, 446, 451
Alw26I GTCTC 2 cut(s) 352, 433
AoxI GGCC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 462
BciVI GTATCC 1 cut(s) 295
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 352, 433
BfaI CTAG 4 cut(s) 332, 362, 420, 513
BfmI CTRYAG 1 cut(s) 306
BfuI GTATCC 1 cut(s) 295
BlpI GCTNAGC 1 cut(s) 447
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 1 cut(s) 133
BmeRI GACNNNNNGTC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 240, 264
Bpu1102I GCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
BseBI CCWGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 250, 457
BseMII CTCAG 3 cut(s) 110, 231, 461
BseRI GAGGAG 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 342, 487
BshFI GGCC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 352, 433
BsnI GGCC 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 503
Bsp143I GATC 2 cut(s) 166, 454
Bsp1720I GCTNAGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 111, 232, 460
BspFNI CGCG 2 cut(s) 342, 487
BspT104I TTCGAA 1 cut(s) 503
BssMI GATC 2 cut(s) 166, 454
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 60, 307
Bst6I CTCTTC 3 cut(s) 12, 308, 350
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 119, 240, 264, 447
BstF5I GGATG 2 cut(s) 250, 457
BstFNI CGCG 2 cut(s) 342, 487
BstKTI GATC 2 cut(s) 169, 457
BstMAI GTCTC 2 cut(s) 352, 433
BstMBI GATC 2 cut(s) 166, 454
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 2 cut(s) 342, 487
BstV2I GAAGAC 1 cut(s) 130
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 250, 457
BtsIMutI CAGTG 2 cut(s) 65, 330
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 133
DdeI CTNAG 4 cut(s) 119, 240, 264, 447
DpnI GATC 2 cut(s) 168, 456
DpnII GATC 2 cut(s) 166, 454
DriI GACNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 3 cut(s) 12, 308, 350
Eam1105I GACNNNNNGTC 1 cut(s) 131
EarI CTCTTC 3 cut(s) 12, 308, 350
Eco47I GGWCC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 460
FaiI YATR 3 cut(s) 86, 255, 471
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FbaI TGATCA 1 cut(s) 454
FokI GGATG 2 cut(s) 257, 444
FspBI CTAG 4 cut(s) 332, 362, 420, 513
HaeIII GGCC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 4 cut(s) 120, 145, 171, 202
Hpy188III TCNNGA 1 cut(s) 513
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 2 cut(s) 60, 307
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 49, 235
HpyF3I CTNAG 4 cut(s) 119, 240, 264, 447
HpySE526I ACGT 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 2 cut(s) 166, 454
LpnPI CCDG 4 cut(s) 35, 81, 447, 474
LweI GCATC 1 cut(s) 222
MaeI CTAG 4 cut(s) 332, 362, 420, 513
MaeII ACGT 1 cut(s) 187
MalI GATC 2 cut(s) 168, 456
MboI GATC 2 cut(s) 166, 454
MboII GAAGA 5 cut(s) 29, 135, 325, 367, 517
MluCI AATT 1 cut(s) 146
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 5 cut(s) 13, 184, 235, 379, 491
MseI TTAA 2 cut(s) 33, 372
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 2 cut(s) 342, 487
NdeII GATC 2 cut(s) 166, 454
NspV TTCGAA 1 cut(s) 503
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspPI GGNCC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 2 cut(s) 33, 372
Sau3AI GATC 2 cut(s) 166, 454
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 462
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 1 cut(s) 146
SspMI CTAG 4 cut(s) 332, 362, 420, 513
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 2 cut(s) 60, 307
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 410, 503
TasI AATT 1 cut(s) 146
Tru1I TTAA 2 cut(s) 33, 372
Tru9I TTAA 2 cut(s) 33, 372
TscAI CASTG 2 cut(s) 65, 330
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 2 cut(s) 65, 330
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 512
XspI CTAG 4 cut(s) 332, 362, 420, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.