Rw1G001650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000499
Physical Location & Seq
Reverse (-)
2914321 .. 2916406
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001650.1

Sequence Viewer

Length: 549 bp
ATGTCAAGCAGGAACGAAGAAGTTTTGAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAACGCTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTATGGAACAGACAAAAGAAAGAGCTGTAGCTGACTTGACAAGACAATCGACCGAAACATCTGAATTTGAGAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTGAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACGAGACGCAAGCTTCGCATGAGGAACATAGGAAAGCTATGGAAAAGAAGCTGACAGAAGTAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGTGATGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGGAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAATGGTGTCTCTCTTGTTAAAGAAGCTCAGCTTGATCATCCTGATGGACAGAATGGACCCAAAATGCGAAAAAGGAGAGGGTCGAAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

21.19

Weight (kDa)

8.39

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 372
AciI CCGC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 2 cut(s) 203, 325
AgsI TTSAA 3 cut(s) 28, 50, 214
AluBI AGCT 8 cut(s) 31, 137, 143, 269, 293, 307, 476, 481
AluI AGCT 8 cut(s) 31, 137, 143, 269, 293, 307, 476, 481
Alw26I GTCTC 3 cut(s) 254, 382, 463
AoxI GGCC 2 cut(s) 95, 207
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspS9I GGNCC 1 cut(s) 506
AvaII GGWCC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 373, 488
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 3 cut(s) 254, 382, 463
BfaI CTAG 2 cut(s) 362, 392
BfmI CTRYAG 2 cut(s) 138, 336
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 2 cut(s) 68, 71
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 2 cut(s) 69, 72
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 195
BseGI GGATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 97, 209
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 165
BsmAI GTCTC 3 cut(s) 254, 382, 463
BsmBI CGTCTC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 97, 209
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 2 cut(s) 196, 484
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 97, 209
BspCNI CTCAG 1 cut(s) 490
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 201
BssMI GATC 2 cut(s) 196, 484
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 99, 267
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 2 cut(s) 199, 487
BstMAI GTCTC 3 cut(s) 254, 382, 463
BstMBI GATC 2 cut(s) 196, 484
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 76, 271
BstSFI CTRYAG 2 cut(s) 138, 336
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 195
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 2 cut(s) 97, 209
BsuTUI ATCGAT 1 cut(s) 195
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 99, 267
Cfr13I GGNCC 1 cut(s) 506
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 202, 324
CviAII CATG 1 cut(s) 275
CviQI GTAC 2 cut(s) 202, 324
DdeI CTNAG 1 cut(s) 477
DpnI GATC 2 cut(s) 198, 486
DpnII GATC 2 cut(s) 196, 484
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco147I AGGCCT 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 1 cut(s) 278
FaiI YATR 5 cut(s) 116, 276, 285, 296, 414
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FatI CATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 2 cut(s) 68, 71
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 2 cut(s) 68, 71
FspBI CTAG 2 cut(s) 362, 392
GluI GCNGC 2 cut(s) 68, 71
HaeIII GGCC 2 cut(s) 97, 209
HgaI GACGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 278
HindIII AAGCTT 2 cut(s) 29, 267
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 2 cut(s) 175, 232
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 1 cut(s) 324
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 271
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 196, 484
LpnPI CCDG 4 cut(s) 65, 74, 111, 504
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 348
MaeI CTAG 2 cut(s) 362, 392
MaeII ACGT 1 cut(s) 326
MalI GATC 2 cut(s) 198, 486
MboI GATC 2 cut(s) 196, 484
MboII GAAGA 4 cut(s) 29, 397, 454, 547
MluCI AATT 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 52, 214, 271, 409, 521
MseI TTAA 3 cut(s) 33, 402, 468
MslI CAYNNNNRTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 56
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 76, 271
NdeII GATC 2 cut(s) 196, 484
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 508
PceI AGGCCT 1 cut(s) 209
PctI GAATGC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 69, 72
PspN4I GGNNCC 1 cut(s) 508
PspPI GGNCC 1 cut(s) 506
RsaI GTAC 2 cut(s) 203, 325
RsaNI GTAC 2 cut(s) 202, 324
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 3 cut(s) 33, 402, 468
SatI GCNGC 2 cut(s) 68, 71
Sau3AI GATC 2 cut(s) 196, 484
Sau96I GGNCC 1 cut(s) 506
SetI ASST 9 cut(s) 33, 139, 145, 271, 295, 309, 329, 478, 483
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 2 cut(s) 138, 336
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 492
Sse9I AATT 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 70
SspMI CTAG 2 cut(s) 362, 392
StuI AGGCCT 1 cut(s) 209
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 329
TaqI TCGA 4 cut(s) 161, 195, 440, 533
TaqII GACCGA 1 cut(s) 179
TasI AATT 1 cut(s) 176
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 3 cut(s) 33, 402, 468
Tru9I TTAA 3 cut(s) 33, 402, 468
TscAI CASTG 1 cut(s) 360
TseI GCWGC 1 cut(s) 67
TspRI CASTG 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 1 cut(s) 176
XspI CTAG 2 cut(s) 362, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.