Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000499

Physical Location & Seq

Genomic Coordinates Reverse (-)

1634105 .. 1636653

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01220.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGGAAGCAGATGCAGAGGTATTGCAGGTGGAAATTCGTAGACTGATTCGGACTGTCAAGGAGTTGCGCAACAATGTGAGAGATCTCAGTAGACAGCTGAAAGAGACCCGGAACACGCTCAAGGAAAGAGATGAAGAGCTGGATGATTGCAAAGCCAGACTTGCTGGAAAGAAAACTCGGCCAAAGAAAAAGGGGCCCAAGGCGTCTGCTCAGCTGCCTTATATGTCTCTTGTTTATGTGTTCATGTTCTGGATGCTTGCCGGTCTCTTTGTTATGCATTTTATGATGGACATTGACAAGGGAGTAGGCTCAGCTACTGATGCATACTATGCAACTTCTGTTACGGTGCATGGGGTTGGATTTGGTGATATTCCTCCCGAGTCAGCTCTTGCTCTTATTCTCTGTGATATGTTGCCCGTGCTTGGGTACTTTGTGCCGATTGTTATCAGTCATTTTCTGCGTCGCGTAGCACTATGGTTTGGTCAGAAGTTTATCCCTGAACCTACGAGGTTCTTTTATGGAGTTATTTCAGCTATTGGAATGATCTTGGTGACTCTGTTGTCAGGGATGATAGGGATATATAGTTTTGAGCTGGAGGCACTTAGGACATCCTTGTCTGAGCAGCAGCATCTTAGTGCATCTCTTTCTTATCCATCTGTATGGGCAGATATTCTTGTCATCTTACACCTTACAGTGATGACTATGACCTCCACCGGTTATGGTGATTTTTCCTTCCATACTACACATGGCAGACTGTTTGCCACATTCTGGATCCCTCTCTGTACTACCTCGTATTCGGTTGCAATGACAATTCTAGTCGAGCCTATTTTGGGGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

281

Amino Acids

31.46

Weight (kDa)

7.74

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	150 - 200	2.9e-07	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02510
fragaria_vesca	FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica	MD05G1161500.v1.1
pyrus_communis	pycom05g15160
rosa_chinensis	RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata	RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora	Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa	Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha	Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana	Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
AasI	GACNNNNNNGTC	2 cut(s)	562, 616
Acc16I	TGCGCA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccI	GTMKAC	2 cut(s)	43, 94
AccII	CGCG	1 cut(s)	468
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	769, 782
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	2 cut(s)	431, 787
AfiI	CCNNNNNNNGG	4 cut(s)	425, 426, 771, 833
AgeI	ACCGGT	1 cut(s)	716
AluBI	AGCT	7 cut(s)	100, 142, 217, 317, 389, 536, 595
AluI	AGCT	7 cut(s)	100, 142, 217, 317, 389, 536, 595
Alw26I	GTCTC	3 cut(s)	101, 234, 272
AlwI	GGATC	2 cut(s)	769, 782
AlwNI	CAGNNNCTG	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	182, 197
ApaI	GGGCCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	217, 625, 628
ApoI	RAATTY	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	197, 198
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	380, 565, 737
AvaI	CYCGRG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	774
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	204, 637, 640
BccI	CCATC	2 cut(s)	283, 664
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	101, 234, 272
BfaI	CTAG	2 cut(s)	818, 841
BfuAI	ACCTGC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	3 cut(s)	218, 626, 629
BlpI	GCTNAGC	2 cut(s)	213, 313
BlsI	GCNGC	3 cut(s)	219, 627, 630
Bme1390I	CCNGG	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	197, 198
BmiI	GGNNCC	3 cut(s)	198, 199, 776
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	5 cut(s)	4, 246, 313, 640, 650
BpmI	CTGGAG	1 cut(s)	617
Bpu1102I	GCTNAGC	2 cut(s)	213, 313
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	2 cut(s)	101, 272
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	4 cut(s)	425, 426, 771, 833
Bse118I	RCCGGY	2 cut(s)	263, 716
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	4 cut(s)	151, 261, 576, 611
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	425, 426, 771, 833
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	4 cut(s)	103, 227, 327, 612
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	3 cut(s)	204, 637, 640
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	2 cut(s)	184, 199
BshTI	ACCGGT	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	112, 264, 717
BslI	CCNNNNNNNGG	4 cut(s)	425, 426, 771, 833
BsmAI	GTCTC	3 cut(s)	101, 234, 272
BsnI	GGCC	2 cut(s)	184, 199
Bso31I	GGTCTC	2 cut(s)	101, 272
BsoBI	CYCGRG	1 cut(s)	380
Bsp120I	GGGCCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	85, 546, 774, 837
Bsp1720I	GCTNAGC	2 cut(s)	213, 313
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	184, 199
BspCNI	CTCAG	4 cut(s)	102, 226, 326, 613
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	198, 199, 776
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	769, 782
BspQI	GCTCTTC	1 cut(s)	132
BspTNI	GGTCTC	2 cut(s)	101, 272
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	2 cut(s)	263, 716
BssAI	RCCGGY	2 cut(s)	263, 716
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	85, 546, 774, 837
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	4 cut(s)	58, 349, 697, 759
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	6 cut(s)	89, 213, 313, 605, 621, 635
BstF5I	GGATG	4 cut(s)	151, 261, 576, 611
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	4 cut(s)	88, 549, 777, 840
BstMAI	GTCTC	3 cut(s)	101, 234, 272
BstMBI	GATC	4 cut(s)	85, 546, 774, 837
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 323, 332
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	204, 637, 640
BstX2I	RGATCY	3 cut(s)	85, 774, 837
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	3 cut(s)	85, 774, 837
BsuRI	GGCC	2 cut(s)	184, 199
BtsCI	GGATG	4 cut(s)	151, 261, 576, 611
BtsIMutI	CAGTG	1 cut(s)	702
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	2 cut(s)	263, 716
Cfr13I	GGNCC	2 cut(s)	197, 198
CseI	GACGC	2 cut(s)	195, 452
Csp6I	GTAC	2 cut(s)	430, 786
CspAI	ACCGGT	1 cut(s)	716
CviAII	CATG	3 cut(s)	247, 353, 749
CviQI	GTAC	2 cut(s)	430, 786
DdeI	CTNAG	6 cut(s)	89, 213, 313, 605, 621, 635
DpnI	GATC	4 cut(s)	87, 548, 776, 839
DpnII	GATC	4 cut(s)	85, 546, 774, 837
DrdI	GACNNNNNNGTC	2 cut(s)	562, 616
DseDI	GACNNNNNNGTC	2 cut(s)	562, 616
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	2 cut(s)	101, 272
Eco88I	CYCGRG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	2 cut(s)	282, 328
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	250, 356, 752
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	3 cut(s)	246, 352, 748
FblI	GTMKAC	2 cut(s)	43, 94
Fnu4HI	GCNGC	3 cut(s)	218, 626, 629
FokI	GGATG	4 cut(s)	158, 268, 583, 598
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	218, 626, 629
FspBI	CTAG	2 cut(s)	818, 841
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	218, 626, 629
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	184, 199
HapII	CCGG	3 cut(s)	112, 264, 717
HgaI	GACGC	2 cut(s)	195, 452
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	250, 356, 752
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	49, 383, 556
HpaII	CCGG	3 cut(s)	112, 264, 717
HphI	GGTGA	3 cut(s)	380, 565, 737
Hpy166II	GTNNAC	2 cut(s)	44, 95
Hpy188I	TCNGA	3 cut(s)	54, 489, 622
Hpy188III	TCNNGA	3 cut(s)	253, 380, 772
Hpy8I	GTNNAC	2 cut(s)	44, 95
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	1 cut(s)	745
HpyCH4III	ACNGT	4 cut(s)	58, 349, 697, 759
HpyCH4V	TGCA	9 cut(s)	17, 28, 153, 280, 326, 335, 352, 641, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 323, 332
HpyF3I	CTNAG	6 cut(s)	89, 213, 313, 605, 621, 635
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	250, 356, 752
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	85, 546, 774, 837
LguI	GCTCTTC	1 cut(s)	132
Lsp1109I	GCAGC	3 cut(s)	204, 637, 640
LweI	GCATC	5 cut(s)	4, 246, 313, 640, 650
MaeI	CTAG	2 cut(s)	818, 841
MaeIII	GTNAC	2 cut(s)	343, 553
MalI	GATC	4 cut(s)	87, 548, 776, 839
MboI	GATC	4 cut(s)	85, 546, 774, 837
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	3 cut(s)	85, 774, 837
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	36, 813
MlyI	GAGTC	2 cut(s)	392, 550
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	7 cut(s)	13, 387, 504, 592, 721, 789, 802
Mph1103I	ATGCAT	2 cut(s)	282, 328
MslI	CAYNNNNRTG	2 cut(s)	636, 661
MspA1I	CMGCKG	2 cut(s)	100, 217
MspI	CCGG	3 cut(s)	112, 264, 717
MspR9I	CCNGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	3 cut(s)	164, 323, 332
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	4 cut(s)	85, 546, 774, 837
NlaIII	CATG	3 cut(s)	250, 356, 752
NlaIV	GGNNCC	3 cut(s)	198, 199, 776
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	553
NsbI	TGCGCA	1 cut(s)	71
NsiI	ATGCAT	2 cut(s)	282, 328
PaqCI	CACCTGC	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	771
PinAI	ACCGGT	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	219, 627, 630
PleI	GAGTC	2 cut(s)	391, 550
PpsI	GAGTC	2 cut(s)	391, 550
PspN4I	GGNNCC	3 cut(s)	198, 199, 776
PspOMI	GGGCCC	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	197, 198
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	3 cut(s)	85, 774, 837
PvuII	CAGCTG	2 cut(s)	100, 217
RsaI	GTAC	2 cut(s)	431, 787
RsaNI	GTAC	2 cut(s)	430, 786
RseI	CAYNNNNRTG	2 cut(s)	636, 661
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	3 cut(s)	218, 626, 629
Sau3AI	GATC	4 cut(s)	85, 546, 774, 837
Sau96I	GGNCC	2 cut(s)	197, 198
SchI	GAGTC	2 cut(s)	392, 550
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	5 cut(s)	4, 246, 313, 640, 650
SmiMI	CAYNNNNRTG	2 cut(s)	636, 661
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	36, 813
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	818, 841
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	58, 349, 697, 759
TaqI	TCGA	1 cut(s)	822
TasI	AATT	2 cut(s)	36, 813
TatI	WGTACW	1 cut(s)	785
TfiI	GAWTC	1 cut(s)	49
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	3 cut(s)	217, 625, 628
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	2 cut(s)	150, 235
TspRI	CASTG	1 cut(s)	702
Van91I	CCANNNNNTGG	1 cut(s)	771
XapI	RAATTY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	746
XmiI	GTMKAC	2 cut(s)	43, 94
XspI	CTAG	2 cut(s)	818, 841
Zsp2I	ATGCAT	2 cut(s)	282, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.