MD05G1161500.v1.1

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000499
Physical Location & Seq
Forward (+)
29035392 .. 29037504
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1161500.v1.1.491

Sequence Viewer

Length: 255 bp
ATGTTGCTTTTATTGCTGATAGGCTTAGGTATTTCATTATTATATGTATTGGAGGGTGAGAAGTTCTACAATTTAGATGTGTGGTACTTTAATATAATCACTATAATGAGAGTTGACAACGGGGATTTTTCTTTCACGTCCCCCGAAGCTCAAGTTTTCGCTTCCGTCTATGTATTTATAGCATCGCTACTTGTGGAAAACTCTGAAGGGGAATTAGACAATGTTGCTGATGAAATTCAGAATGCAATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

85

Amino Acids

9.4

Weight (kDa)

4.05

Isoelectric Point (pI)

19.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 86
AjiI CACGTC 1 cut(s) 138
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
ApoI RAATTY 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 138
BmsI GCATC 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 13
BtgZI GCGATG 1 cut(s) 168
BtrI CACGTC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 2 cut(s) 24, 149
CviKI_1 RGCY 2 cut(s) 24, 149
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 225
FaiI YATR 6 cut(s) 43, 45, 95, 104, 171, 179
FaqI GGGAC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 205, 240
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 137
LweI GCATC 1 cut(s) 191
MaeII ACGT 1 cut(s) 137
MluCI AATT 3 cut(s) 70, 212, 234
MnlI CCTC 1 cut(s) 46
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 13
PctI GAATGC 1 cut(s) 247
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 90
SetI ASST 3 cut(s) 31, 140, 151
SfaNI GCATC 1 cut(s) 191
SgeI CNNG 5 cut(s) 133, 148, 155, 164, 203
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 3 cut(s) 70, 212, 234
TaiI ACGT 1 cut(s) 140
TasI AATT 3 cut(s) 70, 212, 234
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 24, 246
TspGWI ACGGA 1 cut(s) 154
XapI RAATTY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.