RLG00000030636

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
64740717 .. 64745206
4490 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030636

Sequence Viewer

Length: 951 bp
ATGTTTCCCGTTGCAGAGGACAGGGATGATGAAGAGGAATGGCTGGAGTTCCGGGTCGACTGTGAGCGGTTGATTAGGGAGCGGGCTGAGCAGCATGAAATTGAAGTTGAGGAGGAAGCGAGTGAGGAAGAGATTCAGACTGATGAGATTGAGCCGCTGCAGTTGAGGAATGTGCAATTGGCAGAGGAACTTGCAACAATCAAAGCAAAGCTGGCAACTGCCGAAGAAAAACTGGGTGTGGATTCCACAGCGGTTCCGGCTGGACCTCGTTCTCAGGGTACTGCCTTAGGCCTTTTACCGTACATGGCTATGGTTTATGTGTCGTTATGCTGGGTATTTGCAGGTCTATTGATTTTTCATAATATCCATGACTTTGGTAAGCGTGAGGATCAGTACACATTTGTTGATGCATTTTATTTGACTTCCTATACGGCATCCACGGTTGGTTATGGGGACATTCCTCCTAGAGAGGCTCCTGCTCTTATTATCTCTGATGTGGTAGGTATATTTGGTAGTTTTGTATCGATTATCCTCTGCCATTTTGTGAGTCGGCTAGCCATGTGGTTGGATCAGAGGTTTTTATCACAGCAGAGCCACCGTGTGAGATTCTTCTATCAGGTCCTTTCATCTATTGGCACAATTGTGATAGTTGTATCTTCAGGGATAGCAGGCCTTTATATTTTTGAGCGGGAGCGGCTAGCTCATGATTTACCTGATCATTCATCCTCACGGATCTTTCTCGACATACTTCACTTGACAGTTATGACTACGACTACCGTTGGATATGGAGATTTGGCCTTTGCTACTGCTGGTGGGAGGTTATTCGCCACATTGTGGATTCCTTTCTCTACTACCTTCTATTCAGTCGCGATCACATTCCTGGTCCAGGCTATTCTGAGCGCTATGTCACGTCGATCTTTACGAGGACACATCCGTGCATGGAGCAGCTAG

Protein Analysis

317

Amino Acids

35.59

Weight (kDa)

4.91

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 109 - 180 1.8e-08 Ion channel
Ion_trans_2 PF07885 245 - 298 5.9e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 834
AccBSI CCGCTC 4 cut(s) 67, 82, 688, 694
AccI GTMKAC 1 cut(s) 57
AccII CGCG 1 cut(s) 869
AciI CCGC 6 cut(s) 67, 82, 155, 251, 688, 694
AclWI GGATC 3 cut(s) 396, 576, 740
AcuI CTGAAG 1 cut(s) 642
AdeI CACNNNGTG 2 cut(s) 601, 834
AfaI GTAC 3 cut(s) 280, 302, 395
AfeI AGCGCT 1 cut(s) 901
AfiI CCNNNNNNNGG 2 cut(s) 834, 886
AgsI TTSAA 1 cut(s) 104
AjiI CACGTC 1 cut(s) 911
AjnI CCWGG 2 cut(s) 879, 885
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 2 cut(s) 641, 933
AluBI AGCT 3 cut(s) 211, 701, 948
AluI AGCT 3 cut(s) 211, 701, 948
AlwI GGATC 3 cut(s) 396, 576, 740
Aor51HI AGCGCT 1 cut(s) 901
AoxI GGCC 3 cut(s) 289, 670, 795
ApeKI GCWGC 3 cut(s) 91, 157, 945
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 902
AspS9I GGNCC 3 cut(s) 263, 619, 883
AsuC2I CCSGG 1 cut(s) 53
AsuNHI GCTAGC 2 cut(s) 553, 697
AvaII GGWCC 3 cut(s) 263, 619, 883
AxyI CCTNAGG 1 cut(s) 286
BbvI GCAGC 2 cut(s) 103, 144
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 881, 887
BclI TGATCA 1 cut(s) 715
BcnI CCSGG 1 cut(s) 53
BfaI CTAG 4 cut(s) 465, 554, 698, 949
BfmI CTRYAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 903
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 5 cut(s) 92, 155, 158, 695, 946
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 5 cut(s) 93, 156, 159, 696, 947
Bme1390I CCNGG 3 cut(s) 53, 881, 887
Bme18I GGWCC 3 cut(s) 263, 619, 883
BmgBI CACGTC 1 cut(s) 911
BmgT120I GGNCC 3 cut(s) 263, 619, 883
BmiI GGNNCC 2 cut(s) 255, 474
BmrFI CCNGG 3 cut(s) 53, 881, 887
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 397, 443
BmtI GCTAGC 2 cut(s) 557, 701
BmuI ACTGGG 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 524
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 2 cut(s) 834, 886
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 286
BseBI CCWGG 2 cut(s) 881, 887
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 4 cut(s) 31, 434, 722, 930
BseLI CCNNNNNNNGG 2 cut(s) 834, 886
BseMII CTCAG 3 cut(s) 78, 287, 887
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 103, 144
BseYI CCCAGC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 869
BshFI GGCC 3 cut(s) 291, 672, 797
BshVI ATCGAT 1 cut(s) 524
BsiSI CCGG 2 cut(s) 52, 257
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 834, 886
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 3 cut(s) 291, 672, 797
Bsp143I GATC 6 cut(s) 388, 568, 715, 732, 870, 914
Bsp1720I GCTNAGC 1 cut(s) 87
Bsp68I TCGCGA 1 cut(s) 869
BspACI CCGC 6 cut(s) 67, 82, 155, 251, 688, 694
BspANI GGCC 3 cut(s) 291, 672, 797
BspCNI CTCAG 3 cut(s) 79, 286, 888
BspDI ATCGAT 1 cut(s) 524
BspFNI CGCG 1 cut(s) 869
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 255, 474
BspMAI CTGCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 332
BspOI GCTAGC 2 cut(s) 557, 701
BspPI GGATC 3 cut(s) 396, 576, 740
BsrBI CCGCTC 4 cut(s) 67, 82, 688, 694
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 6 cut(s) 388, 568, 715, 732, 870, 914
Bst2UI CCWGG 2 cut(s) 881, 887
Bst4CI ACNGT 6 cut(s) 62, 300, 442, 599, 760, 778
Bst6I CTCTTC 2 cut(s) 27, 123
BstC8I GCNNGC 5 cut(s) 84, 213, 555, 670, 699
BstDEI CTNAG 4 cut(s) 87, 273, 286, 896
BstDSI CCRYGG 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 4 cut(s) 31, 434, 722, 930
BstFNI CGCG 1 cut(s) 869
BstH2I RGCGCY 1 cut(s) 903
BstHHI GCGC 1 cut(s) 902
BstKTI GATC 6 cut(s) 391, 571, 718, 735, 873, 917
BstMBI GATC 6 cut(s) 388, 568, 715, 732, 870, 914
BstMWI GCNNNNNNNGC 4 cut(s) 88, 212, 257, 694
BstNI CCWGG 2 cut(s) 881, 887
BstSCI CCNGG 3 cut(s) 51, 879, 885
BstSFI CTRYAG 1 cut(s) 158
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 2 cut(s) 103, 144
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 2 cut(s) 374, 565
BstYI RGATCY 1 cut(s) 732
Bsu15I ATCGAT 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 286
BsuRI GGCC 3 cut(s) 291, 672, 797
BsuTUI ATCGAT 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 438
BtrI CACGTC 1 cut(s) 911
BtsCI GGATG 4 cut(s) 31, 434, 722, 930
BtuMI TCGCGA 1 cut(s) 869
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 5 cut(s) 84, 213, 555, 670, 699
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 902
Cfr13I GGNCC 3 cut(s) 263, 619, 883
ClaI ATCGAT 1 cut(s) 524
Csp6I GTAC 3 cut(s) 279, 301, 394
CviAII CATG 6 cut(s) 95, 304, 368, 559, 704, 939
CviQI GTAC 3 cut(s) 279, 301, 394
DdeI CTNAG 4 cut(s) 87, 273, 286, 896
DpnI GATC 6 cut(s) 390, 570, 717, 734, 872, 916
DpnII GATC 6 cut(s) 388, 568, 715, 732, 870, 914
DraIII CACNNNGTG 2 cut(s) 601, 834
Eam1104I CTCTTC 2 cut(s) 27, 123
EarI CTCTTC 2 cut(s) 27, 123
Eco147I AGGCCT 2 cut(s) 291, 672
Eco47I GGWCC 3 cut(s) 263, 619, 883
Eco47III AGCGCT 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 286
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 2 cut(s) 879, 885
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 6 cut(s) 98, 307, 371, 562, 707, 942
FaqI GGGAC 1 cut(s) 467
FatI CATG 6 cut(s) 94, 303, 367, 558, 703, 938
FauI CCCGC 2 cut(s) 75, 681
FbaI TGATCA 1 cut(s) 715
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 92, 155, 158, 695, 946
FokI GGATG 4 cut(s) 38, 421, 709, 917
Fsp4HI GCNGC 5 cut(s) 92, 155, 158, 695, 946
FspBI CTAG 4 cut(s) 465, 554, 698, 949
GlaI GCGC 1 cut(s) 901
GluI GCNGC 5 cut(s) 92, 155, 158, 695, 946
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 903
HaeIII GGCC 3 cut(s) 291, 672, 797
HapII CCGG 2 cut(s) 52, 257
HhaI GCGC 1 cut(s) 902
Hin1II CATG 6 cut(s) 98, 307, 371, 562, 707, 942
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 5 cut(s) 133, 242, 547, 606, 838
HpaII CCGG 2 cut(s) 52, 257
Hpy166II GTNNAC 2 cut(s) 58, 396
Hpy188I TCNGA 4 cut(s) 138, 493, 573, 897
Hpy188III TCNNGA 3 cut(s) 704, 740, 868
Hpy8I GTNNAC 2 cut(s) 58, 396
Hpy99I CGWCG 1 cut(s) 915
HpyAV CCTTC 1 cut(s) 865
HpyCH4III ACNGT 6 cut(s) 62, 300, 442, 599, 760, 778
HpyCH4IV ACGT 1 cut(s) 910
HpyCH4V TGCA 7 cut(s) 14, 160, 175, 194, 341, 410, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 212, 257, 694
HpyF3I CTNAG 4 cut(s) 87, 273, 286, 896
HpySE526I ACGT 1 cut(s) 910
Hsp92II CATG 6 cut(s) 98, 307, 371, 562, 707, 942
HspAI GCGC 1 cut(s) 900
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 6 cut(s) 388, 568, 715, 732, 870, 914
LmnI GCTCC 4 cut(s) 79, 478, 691, 942
Lsp1109I GCAGC 2 cut(s) 103, 144
LweI GCATC 2 cut(s) 397, 443
MaeI CTAG 4 cut(s) 465, 554, 698, 949
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 1 cut(s) 906
MalI GATC 6 cut(s) 390, 570, 717, 734, 872, 916
MbiI CCGCTC 4 cut(s) 67, 82, 688, 694
MboI GATC 6 cut(s) 388, 568, 715, 732, 870, 914
MboII GAAGA 5 cut(s) 44, 140, 236, 601, 648
MfeI CAATTG 2 cut(s) 176, 639
MflI RGATCY 1 cut(s) 732
MluCI AATT 3 cut(s) 99, 176, 639
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 2 cut(s) 546, 760
Mph1103I ATGCAT 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 132
MslI CAYNNNNRTG 3 cut(s) 308, 641, 933
MspA1I CMGCKG 2 cut(s) 157, 251
MspI CCGG 2 cut(s) 52, 257
MspR9I CCNGG 3 cut(s) 53, 881, 887
MunI CAATTG 2 cut(s) 176, 639
MvaI CCWGG 2 cut(s) 881, 887
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 4 cut(s) 88, 212, 257, 694
NciI CCSGG 1 cut(s) 53
NdeII GATC 6 cut(s) 388, 568, 715, 732, 870, 914
NheI GCTAGC 2 cut(s) 553, 697
NlaIII CATG 6 cut(s) 98, 307, 371, 562, 707, 942
NlaIV GGNNCC 2 cut(s) 255, 474
NmuCI GTSAC 1 cut(s) 906
NruI TCGCGA 1 cut(s) 869
NsiI ATGCAT 1 cut(s) 412
OliI CACNNNNGTG 2 cut(s) 641, 933
PagI TCATGA 1 cut(s) 703
PceI AGGCCT 2 cut(s) 291, 672
PcsI WCGNNNNNNNCGW 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 4 cut(s) 133, 242, 606, 838
PflMI CCANNNNNTGG 1 cut(s) 834
PkrI GCNGC 5 cut(s) 93, 156, 159, 696, 947
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 2 cut(s) 879, 885
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 2 cut(s) 879, 885
PspN4I GGNNCC 2 cut(s) 255, 474
PspPI GGNCC 3 cut(s) 263, 619, 883
PspPPI RGGWCCY 1 cut(s) 619
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 732
RruI TCGCGA 1 cut(s) 869
RsaI GTAC 3 cut(s) 280, 302, 395
RsaNI GTAC 3 cut(s) 279, 301, 394
RseI CAYNNNNRTG 3 cut(s) 308, 641, 933
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 5 cut(s) 92, 155, 158, 695, 946
Sau3AI GATC 6 cut(s) 388, 568, 715, 732, 870, 914
Sau96I GGNCC 3 cut(s) 263, 619, 883
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 53, 881, 887
SfaNI GCATC 2 cut(s) 397, 443
SfcI CTRYAG 1 cut(s) 158
SinI GGWCC 3 cut(s) 263, 619, 883
SmiMI CAYNNNNRTG 3 cut(s) 308, 641, 933
Sse9I AATT 3 cut(s) 99, 176, 639
SseBI AGGCCT 2 cut(s) 291, 672
SsiI CCGC 6 cut(s) 67, 82, 155, 251, 688, 694
SspMI CTAG 4 cut(s) 465, 554, 698, 949
StuI AGGCCT 2 cut(s) 291, 672
StyD4I CCNGG 3 cut(s) 51, 879, 885
TaaI ACNGT 6 cut(s) 62, 300, 442, 599, 760, 778
TaiI ACGT 1 cut(s) 913
TaqI TCGA 4 cut(s) 57, 524, 741, 913
TasI AATT 3 cut(s) 99, 176, 639
TatI WGTACW 1 cut(s) 393
TauI GCSGC 2 cut(s) 157, 697
TfiI GAWTC 4 cut(s) 133, 242, 606, 838
TseFI GTSAC 1 cut(s) 906
TseI GCWGC 3 cut(s) 91, 157, 945
Tsp45I GTSAC 1 cut(s) 906
TspDTI ATGAA 5 cut(s) 45, 111, 347, 615, 711
TspGWI ACGGA 2 cut(s) 745, 923
Van91I CCANNNNNTGG 1 cut(s) 834
VpaK11BI GGWCC 3 cut(s) 263, 619, 883
XagI CCTNNNNNAGG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 4 cut(s) 465, 554, 698, 949
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.