RchiOBHm_Chr1g0316801

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000499
Physical Location & Seq
Reverse (-)
4306954 .. 4307407
454 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54720

Sequence Viewer

Length: 357 bp
ATGATCTTGCTGACTCTATTTTTTGGGATGGCTAGCATTTATATCTTAGAGTGGCTGCACCTAGCTAGTGGATCTCCATCTCCATCTCCATCTCCTTCCACTATGTTACCTACTGATGCATACGCATGGGTCCTCTTTGTTGACATATTCCACCTCTCAGTTATGATGATGATTACCACTGGATTTGGAGATTTCGTCTTCACTACTGCATCTGGGAGAGCGTTTGCCATAGTATGGGTTCCTTTCTCTACTATAGTGTTTATGGTTGCGAGTACGTTCTTGGCTCAGACTTTTTTGTTCTATCTTGCACCTATCATTGGAGGTTACAGCTTGCCCCAGGGGATCCATCGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

5.97

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AclWI GGATC 3 cut(s) 79, 337, 350
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 234, 317
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 2 cut(s) 65, 330
AluI AGCT 2 cut(s) 65, 330
AlwI GGATC 3 cut(s) 79, 337, 350
ApeKI GCWGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 130
BamHI GGATCC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 42
BccI CCATC 5 cut(s) 22, 85, 91, 97, 354
BciT130I CCWGG 1 cut(s) 338
BfaI CTAG 3 cut(s) 33, 62, 66
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 3 cut(s) 131, 240, 344
BmrFI CCNGG 1 cut(s) 338
BmsI GCATC 2 cut(s) 106, 218
BmtI GCTAGC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 336, 337
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 317
Bse1I ACTGG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 336, 337
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 234, 317
BseMII CTCAG 2 cut(s) 171, 299
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 234, 317
Bsp143I GATC 3 cut(s) 3, 71, 342
BspCNI CTCAG 2 cut(s) 170, 298
BspLI GGNNCC 3 cut(s) 131, 240, 344
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 3 cut(s) 79, 337, 350
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 336, 337
BssMI GATC 3 cut(s) 3, 71, 342
Bst2UI CCWGG 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 34, 332
BstDEI CTNAG 3 cut(s) 46, 157, 285
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 3 cut(s) 6, 74, 345
BstMBI GATC 3 cut(s) 3, 71, 342
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 71, 342
BstYI RGATCY 2 cut(s) 71, 342
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 177, 352
Cac8I GCNNGC 2 cut(s) 34, 332
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 1 cut(s) 126
CviJI RGCY 5 cut(s) 32, 55, 65, 284, 330
CviKI_1 RGCY 5 cut(s) 32, 55, 65, 284, 330
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 46, 157, 285
DpnI GATC 3 cut(s) 5, 73, 344
DpnII GATC 3 cut(s) 3, 71, 342
Eco47I GGWCC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 1 cut(s) 129
FatI CATG 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 3 cut(s) 33, 62, 66
GluI GCNGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 129
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 288
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 58, 119, 209, 308
HpyF3I CTNAG 3 cut(s) 46, 157, 285
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 129
Kzo9I GATC 3 cut(s) 3, 71, 342
LpnPI CCDG 4 cut(s) 165, 198, 323, 350
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 2 cut(s) 106, 218
MaeI CTAG 3 cut(s) 33, 62, 66
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 105, 323, 350
MalI GATC 3 cut(s) 5, 73, 344
MboI GATC 3 cut(s) 3, 71, 342
MboII GAAGA 1 cut(s) 190
MflI RGATCY 2 cut(s) 71, 342
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 3 cut(s) 143, 164, 314
Mph1103I ATGCAT 1 cut(s) 121
MslI CAYNNNNRTG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
NdeII GATC 3 cut(s) 3, 71, 342
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 3 cut(s) 131, 240, 344
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 121
PasI CCCWGGG 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 131, 240, 344
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 2 cut(s) 71, 342
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 124
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 3 cut(s) 3, 71, 342
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 338
SetI ASST 8 cut(s) 63, 67, 112, 156, 278, 313, 325, 332
SfaNI GCATC 2 cut(s) 106, 218
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 124
SspMI CTAG 3 cut(s) 33, 62, 66
StyD4I CCNGG 1 cut(s) 336
TaiI ACGT 1 cut(s) 278
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 350
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 130
XspI CTAG 3 cut(s) 33, 62, 66
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.