Rh1DG017300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Reverse (-)
2844055 .. 2844483
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG017300.1

Sequence Viewer

Length: 234 bp
ATGCTAGAGAAAAGTTTGTCTGATGAATCGGGCGACATTAATTTGTACAAAAGGCGTGTAGAGATGGAGAAGACACTTGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTATTCTCGAACCGAAGGACTCTAGTGATGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCTTGGCGGACAGAGTGGACAGAAAATGCGAAAAAGGCGAGGGTCACAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

6.57

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 1 cut(s) 80
AluBI AGCT 2 cut(s) 161, 166
AluI AGCT 2 cut(s) 161, 166
Alw26I GTCTC 1 cut(s) 148
AseI ATTAAT 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 1 cut(s) 58
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 2 cut(s) 5, 135
BlpI GCTNAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 162
BseMII CTCAG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 169
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 45
BssMI GATC 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 3 cut(s) 104, 161, 166
CviKI_1 RGCY 3 cut(s) 104, 161, 166
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 195
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FbaI TGATCA 1 cut(s) 169
FspBI CTAG 2 cut(s) 5, 135
HinfI GANTC 2 cut(s) 26, 131
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 5, 135
MaeIII GTNAC 1 cut(s) 216
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 40
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 94, 206
MseI TTAA 2 cut(s) 39, 87
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 39
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 39, 87
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 163, 168
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 5, 135
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 39, 87
Tru9I TTAA 2 cut(s) 39, 87
TseFI GTSAC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 39
VspI ATTAAT 1 cut(s) 39
XspI CTAG 2 cut(s) 5, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.