Rh1AG024000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000499
Physical Location & Seq
Forward (+)
4273693 .. 4274143
451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG024000.1

Sequence Viewer

Length: 273 bp
ATGGATTTACAGCTGATAAAAATTGAGCGAAACTTAGTTGAGCTAGAGGAGATCGTGTCTGATGAGTCAAGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTAAAAAATCTTGATGTCTTCTGTGCGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGCTTGATCATCCTGGTGGACAGAATGGACAGAAAACACGAAAAAGGCGAGGTTCGAAGAAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

9.23

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 4 cut(s) 13, 43, 200, 205
AluI AGCT 4 cut(s) 13, 43, 200, 205
Alw26I GTCTC 2 cut(s) 106, 187
AsuII TTCGAA 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 124
BccI CCATC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 216
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 106, 187
BfaI CTAG 2 cut(s) 44, 174
BisI GCNGC 1 cut(s) 141
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
BseBI CCWGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 106, 187
Bsp119I TTCGAA 1 cut(s) 257
Bsp143I GATC 2 cut(s) 51, 208
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 257
BssMI GATC 2 cut(s) 51, 208
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 3 cut(s) 34, 201, 267
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 54, 211
BstMAI GTCTC 2 cut(s) 106, 187
BstMBI GATC 2 cut(s) 51, 208
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 211
CseI GACGC 1 cut(s) 102
CviJI RGCY 5 cut(s) 13, 43, 143, 200, 205
CviKI_1 RGCY 5 cut(s) 13, 43, 143, 200, 205
DdeI CTNAG 3 cut(s) 34, 201, 267
DpnI GATC 2 cut(s) 53, 210
DpnII GATC 2 cut(s) 51, 208
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 214
FaiI YATR 2 cut(s) 98, 146
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 44, 174
GluI GCNGC 1 cut(s) 141
HgaI GACGC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 4 cut(s) 65, 72, 161, 170
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 69, 125, 158
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 160, 197
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 3 cut(s) 34, 201, 267
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 51, 208
LpnPI CCDG 2 cut(s) 201, 228
MaeI CTAG 2 cut(s) 44, 174
MalI GATC 2 cut(s) 53, 210
MboI GATC 2 cut(s) 51, 208
MboII GAAGA 3 cut(s) 121, 124, 271
MluCI AATT 1 cut(s) 21
MlyI GAGTC 3 cut(s) 74, 81, 179
MnlI CCTC 2 cut(s) 40, 245
MslI CAYNNNNRTG 2 cut(s) 101, 216
MspA1I CMGCKG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 2 cut(s) 51, 208
NspV TTCGAA 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 3 cut(s) 73, 80, 178
PpsI GAGTC 3 cut(s) 73, 80, 178
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 13
RseI CAYNNNNRTG 2 cut(s) 101, 216
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 51, 208
SchI GAGTC 3 cut(s) 74, 81, 179
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 15, 45, 202, 207, 256
SfuI TTCGAA 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 101, 216
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 44, 174
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 159, 164, 257
TasI AATT 1 cut(s) 21
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 93
XspI CTAG 2 cut(s) 44, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.