Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000499

Physical Location & Seq

Genomic Coordinates Forward (+)

19050083 .. 19050673

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTCACTATCGGGTATGGTGATGTTACACCACTCACACCAACCTCCAAGGTGATCGCCATCAGTATTGACTTGATTGCATATTGTTTTATATTTGTTCTAGTTAGTGATGTCATAGATGACAATATAGGAGCACTATATGTCCACAAGGAGATCAACAAGCTTGATTCAATATATTTGGTTTTGATGACTCTATTGACTATAGGTTATGGGGACACATCATTTAGGACGCAAAATGGAAGACTGTTTGCTATATTTTGGATTCGGGATGCCATACATGGTTGGTTTGCAGCTACCCCTTCGGTTCTAAGAGTCTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022840 GO:0022841 GO:0022842 GO:0022857 GO:0022890 GO:0030001 GO:0030322 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans_2

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

5.41

Isoelectric Point (pI)

20.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	1 - 39	3.7e-07	Ion channel
Ion_trans_2	PF07885	51 - 88	1.1e-10	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02510
fragaria_vesca	FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica	MD05G1161500.v1.1
pyrus_communis	pycom05g15160
rosa_chinensis	RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata	RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora	Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa	Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha	Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana	Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	2 cut(s)	163, 293
AluI	AGCT	2 cut(s)	163, 293
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	32, 64
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	54, 153
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	54, 153
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	57, 156
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	54, 153
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	274
CseI	GACGC	1 cut(s)	238
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	2 cut(s)	163, 293
CviKI_1	RGCY	2 cut(s)	163, 293
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	56, 155
DpnII	GATC	2 cut(s)	54, 153
Eco130I	CCWWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	281
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	1 cut(s)	291
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	4 cut(s)	167, 190, 262, 312
HphI	GGTGA	2 cut(s)	32, 64
Hpy166II	GTNNAC	2 cut(s)	6, 145
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	6, 145
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	80, 290
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	54, 153
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	56, 155
MboI	GATC	2 cut(s)	54, 153
MboII	GAAGA	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	184, 321
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	322
NdeII	GATC	2 cut(s)	54, 153
NlaIII	CATG	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	167, 262
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	184, 320
PpsI	GAGTC	2 cut(s)	184, 320
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	54, 153
SchI	GAGTC	2 cut(s)	184, 321
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	5 cut(s)	47, 54, 165, 208, 295
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	201
SgeI	CNNG	9 cut(s)	25, 61, 85, 113, 160, 172, 176, 278, 290
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	167, 262
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseI	GCWGC	1 cut(s)	290
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.