Rroxscaffold_4G00330760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000499
Physical Location & Seq
Forward (+)
64471540 .. 64472033
494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330760.1

Sequence Viewer

Length: 393 bp
ATGATGGAATTCTCAGCCGCGCGCTTTGCCAAGTACAAGAAGAAGAAGCGGAGAAAAAAGGAGGCTGACGAAGAGGGATGGCTGGAGTTCCGGGTTGACGGTGGGCAGTTGATTAGGGAGCGGGCTAGACTTGAGCAGCATGAAATTGAAGTTGAGGAGGAAGCGAGAGAAGAAGAGATTCAGACTGGTAATATTCGGCGGCTGAAGTTGAGGAATGTGCAATTGGCAGAGGAACTTGCAACGATCAAAGCAAAGCTGGCACATGCCGGTGGGTTTGAGAGAGCAACAGTCGGTGGGTTGGGGAGTGTTGAGAGATTAAGAAAACAGAATGGTTTTAGAAGAAACAGAGGGTTCTTAGCTGTAGAAGGGATAAATACAACGAGAGAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.04

Weight (kDa)

9.84

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 2 cut(s) 20, 22
AciI CCGC 4 cut(s) 18, 49, 121, 199
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 2 cut(s) 256, 359
AluI AGCT 2 cut(s) 256, 359
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 2 cut(s) 22, 24
AsuC2I CCSGG 1 cut(s) 92
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 2 cut(s) 126, 391
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 3 cut(s) 18, 137, 200
BlsI GCNGC 3 cut(s) 19, 138, 201
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 190
BsePI GCGCGC 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 2 cut(s) 20, 22
BshFI GGCC 1 cut(s) 389
BsiSI CCGG 2 cut(s) 91, 267
BsnI GGCC 1 cut(s) 389
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 4 cut(s) 18, 49, 121, 199
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 26
BspFNI CGCG 2 cut(s) 20, 22
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 266
BssHII GCGCGC 1 cut(s) 20
BssMI GATC 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 101, 289
Bst6I CTCTTC 2 cut(s) 66, 168
BstC8I GCNNGC 3 cut(s) 22, 123, 258
BstDEI CTNAG 2 cut(s) 13, 355
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 2 cut(s) 20, 22
BstHHI GCGC 2 cut(s) 22, 24
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 26, 257
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 2 cut(s) 20, 22
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 389
BtsCI GGATG 1 cut(s) 83
Cac8I GCNNGC 3 cut(s) 22, 123, 258
CfoI GCGC 2 cut(s) 22, 24
Cfr10I RCCGGY 1 cut(s) 266
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 140, 263
CviJI RGCY 8 cut(s) 17, 65, 82, 125, 202, 256, 359, 389
CviKI_1 RGCY 8 cut(s) 17, 65, 82, 125, 202, 256, 359, 389
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 13, 355
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 66, 168
EarI CTCTTC 2 cut(s) 66, 168
Eco147I AGGCCT 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 8
FaeI CATG 2 cut(s) 143, 266
FaiI YATR 2 cut(s) 141, 264
FatI CATG 2 cut(s) 139, 262
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 18, 137, 200
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 18, 137, 200
FspBI CTAG 2 cut(s) 126, 391
GlaI GCGC 2 cut(s) 21, 23
GluI GCNGC 3 cut(s) 18, 137, 200
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 1 cut(s) 389
HapII CCGG 2 cut(s) 91, 267
HhaI GCGC 2 cut(s) 22, 24
Hin1II CATG 2 cut(s) 143, 266
Hin6I GCGC 2 cut(s) 20, 22
HinP1I GCGC 2 cut(s) 20, 22
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 91, 267
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 101, 289
HpyCH4V TGCA 2 cut(s) 220, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 257
HpyF3I CTNAG 2 cut(s) 13, 355
Hsp92II CATG 2 cut(s) 143, 266
HspAI GCGC 2 cut(s) 20, 22
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 68, 104, 171, 242, 280
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 2 cut(s) 126, 391
MalI GATC 1 cut(s) 245
MbiI CCGCTC 1 cut(s) 121
MboI GATC 1 cut(s) 243
MboII GAAGA 6 cut(s) 52, 55, 83, 182, 185, 351
MfeI CAATTG 1 cut(s) 221
MluCI AATT 3 cut(s) 8, 144, 221
MnlI CCTC 8 cut(s) 55, 67, 148, 151, 204, 223, 341, 379
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 2 cut(s) 91, 267
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 221
MvnI CGCG 2 cut(s) 20, 22
MwoI GCNNNNNNNGC 2 cut(s) 26, 257
NciI CCSGG 1 cut(s) 92
NdeII GATC 1 cut(s) 243
NlaIII CATG 2 cut(s) 143, 266
NspI RCATGY 1 cut(s) 266
PauI GCGCGC 1 cut(s) 20
PceI AGGCCT 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 19, 138, 201
PteI GCGCGC 1 cut(s) 20
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 3 cut(s) 18, 137, 200
Sau3AI GATC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 92
SetI ASST 2 cut(s) 258, 361
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 8, 144, 221
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 4 cut(s) 18, 49, 121, 199
SspI AATATT 1 cut(s) 193
SspMI CTAG 2 cut(s) 126, 391
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 101, 289
TasI AATT 3 cut(s) 8, 144, 221
TatI WGTACW 1 cut(s) 33
TauI GCSGC 2 cut(s) 20, 202
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 126, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.