Rh1AG023500

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000499
Physical Location & Seq
Reverse (-)
4222955 .. 4227054
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG023500.1

Sequence Viewer

Length: 726 bp
ATGTTTTTAGTACATACTGGGCTCTTACTGGTATTTGCTGGTTTAGTTATTTTCACGACTATCTCAGGGTTTGGTACCGGCGAGAGAGTTGGTACATTTATTGACGCCTTTTATGTGGCTTACTGTACGGTCTTCTCAGTTGGTTTCGGCGATATTTCTCCTTTGAAGTCTCTTACTCGGATTCTTTGTGATGTGCTGGGATTGGTGGTTGGACCTATTGTAGTGATGGTACTCACTCATTTTTTGGGTCGGTTAGCATGCGAGTTGGGGCGGTGGATTTCATCTCGCTTTCTTATGAGATATCGAGTGTATTCAACTCTTGGTATGATCTTGCTGGCTCTATTTTTGGGGATGGCCGGCATTTATATCTTCGAGTGGCTGCACCTAGCTGGTGGATCTCCATCTCCATCTCCTTCCACTATGTTACCTACTGATGCATACGCATGGGTCCTCTTTGTTGACATATTCCACCTCTCAGTTATGATGATGAATACCACTGGATTTGGAGATTTCGCCTTCACTACTGCATTTGGGAGAGCGTTTACCATAGTATGGGTTCCTTTCTCTACTATAGTGTTTATGGTTGCGGGTACGTTCTTGGCTCAGACTTTTTTGTTCTATCTTGCACGTATCATTGGAGGTATTTACTTATTTCAGTTTTCTAAATCATGCATTTCTTATAGCTTACTTGAGGTGTTTTCTTCAGCTTTCTTATACACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

241

Amino Acids

26.67

Weight (kDa)

7.69

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 9 - 82 8.8e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 552
AciI CCGC 2 cut(s) 271, 587
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 6 cut(s) 12, 76, 94, 127, 231, 592
AfiI CCNNNNNNNGG 1 cut(s) 552
AgsI TTSAA 2 cut(s) 166, 315
AluBI AGCT 3 cut(s) 389, 684, 707
AluI AGCT 3 cut(s) 389, 684, 707
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 403
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 379
Asp718I GGTACC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 212, 448
AvaII GGWCC 2 cut(s) 212, 448
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 366
BccI CCATC 4 cut(s) 220, 346, 409, 415
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 570
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme18I GGWCC 2 cut(s) 212, 448
BmgT120I GGNCC 2 cut(s) 212, 448
BmiI GGNNCC 3 cut(s) 76, 449, 558
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 710
BsaAI YACGTR 1 cut(s) 629
BsaBI GATNNNNATC 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse118I RCCGGY 2 cut(s) 77, 356
Bse1I ACTGG 3 cut(s) 22, 33, 502
Bse8I GATNNNNATC 1 cut(s) 400
BseGI GGATG 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 4 cut(s) 78, 150, 489, 617
BseNI ACTGG 3 cut(s) 22, 33, 502
BseXI GCAGC 1 cut(s) 366
BseYI CCCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 1 cut(s) 356
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 78, 357
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 327, 395
BspACI CCGC 2 cut(s) 271, 587
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 4 cut(s) 77, 149, 488, 616
BspLI GGNNCC 3 cut(s) 76, 449, 558
BspPI GGATC 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 77, 356
BsrI ACTGG 3 cut(s) 22, 33, 502
BssAI RCCGGY 2 cut(s) 77, 356
BssMI GATC 2 cut(s) 327, 395
BssNI GRCGYC 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 125, 130
BstACI GRCGYC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 259, 336, 358
BstDEI CTNAG 4 cut(s) 64, 136, 475, 603
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 2 cut(s) 330, 398
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 327, 395
BstNSI RCATGY 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 1 cut(s) 356
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 3 cut(s) 259, 336, 358
Cfr10I RCCGGY 2 cut(s) 77, 356
Cfr13I GGNCC 2 cut(s) 212, 448
CseI GACGC 1 cut(s) 113
Csp6I GTAC 6 cut(s) 11, 75, 93, 126, 230, 591
CspCI CAANNNNNGTGG 2 cut(s) 484, 519
CviAII CATG 3 cut(s) 258, 444, 669
CviJI RGCY 9 cut(s) 22, 119, 338, 356, 379, 389, 602, 684, 707
CviKI_1 RGCY 9 cut(s) 22, 119, 338, 356, 379, 389, 602, 684, 707
CviQI GTAC 6 cut(s) 11, 75, 93, 126, 230, 591
DdeI CTNAG 4 cut(s) 64, 136, 475, 603
DpnI GATC 2 cut(s) 329, 397
DpnII GATC 2 cut(s) 327, 395
EaeI YGGCCR 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 212, 448
Eco57I CTGAAG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 448
EcoRV GATATC 1 cut(s) 302
EcoT22I ATGCAT 2 cut(s) 439, 674
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 3 cut(s) 261, 447, 672
FatI CATG 3 cut(s) 257, 443, 668
FauI CCCGC 1 cut(s) 580
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 386
GluI GCNGC 1 cut(s) 380
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 356
HapII CCGG 2 cut(s) 78, 357
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 3 cut(s) 261, 447, 672
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 78, 357
Hpy166II GTNNAC 2 cut(s) 460, 543
Hpy188I TCNGA 2 cut(s) 180, 606
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 460, 543
HpyAV CCTTC 2 cut(s) 423, 526
HpyCH4III ACNGT 2 cut(s) 125, 130
HpyCH4IV ACGT 2 cut(s) 593, 628
HpyCH4V TGCA 5 cut(s) 382, 437, 527, 626, 672
HpyF3I CTNAG 4 cut(s) 64, 136, 475, 603
HpySE526I ACGT 2 cut(s) 593, 628
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 3 cut(s) 261, 447, 672
KpnI GGTACC 1 cut(s) 78
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 327, 395
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 593, 628
MaeIII GTNAC 1 cut(s) 423
MalI GATC 2 cut(s) 329, 397
MboI GATC 2 cut(s) 327, 395
MboII GAAGA 3 cut(s) 124, 361, 693
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 4 cut(s) 461, 482, 632, 685
Mph1103I ATGCAT 2 cut(s) 439, 674
MroNI GCCGGC 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 442
MspI CCGG 2 cut(s) 78, 357
NaeI GCCGGC 1 cut(s) 358
NdeII GATC 2 cut(s) 327, 395
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 3 cut(s) 261, 447, 672
NlaIV GGNNCC 3 cut(s) 76, 449, 558
NsiI ATGCAT 2 cut(s) 439, 674
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 552
PkrI GCNGC 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 448
Psp5II RGGWCCY 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 76, 449, 558
PspPI GGNCC 2 cut(s) 212, 448
PspPPI RGGWCCY 1 cut(s) 448
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 6 cut(s) 12, 76, 94, 127, 231, 592
RsaNI GTAC 6 cut(s) 11, 75, 93, 126, 230, 591
RseI CAYNNNNRTG 1 cut(s) 442
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 327, 395
Sau96I GGNCC 2 cut(s) 212, 448
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 2 cut(s) 212, 448
SmiMI CAYNNNNRTG 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SphI GCATGC 1 cut(s) 261
SsiI CCGC 2 cut(s) 271, 587
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 2 cut(s) 125, 130
TaiI ACGT 2 cut(s) 596, 631
TaqI TCGA 2 cut(s) 304, 372
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 502
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 270, 503
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 212, 448
XceI RCATGY 1 cut(s) 261
XspI CTAG 1 cut(s) 386
Zsp2I ATGCAT 2 cut(s) 439, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.