Rmu_sc0023783.1_g000001

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023783.1
OG0000499
Physical Location & Seq
Reverse (-)
1054 .. 2340
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023783.1_g000001.1.cds

Sequence Viewer

Length: 360 bp
atggctagcatttatatcttcgagtggctgcacctagctggtggatctccatctccatctccttccactatgttacctactgatgcatatgcatgggtcctctttgttgacatattccacctctcagttatgatgatgactaccactggatttggagatttcgtcttcactactgcatctgggagagcgtttgccatagttgttgctgctcgttcgctccatcaatcagtttgcttcagtccactgtctctgtttcaaagcaggctattcatggagcaagccatgagcgagtggccaaattacacgttgaggaggaagaagcaatggttggagaacaaccacgacaacaagtttagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

6.9

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 220
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 52
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 28, 206
AspS9I GGNCC 1 cut(s) 97
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 15, 193
BccI CCATC 3 cut(s) 58, 64, 228
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 6, 35
BisI GCNGC 2 cut(s) 29, 207
BlsI GCNGC 2 cut(s) 30, 208
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 98
BmsI GCATC 2 cut(s) 73, 185
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 49
BseMI GCAATG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 15, 193
BsgI GTGCAG 1 cut(s) 14
BshFI GGCC 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 44
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 329
BsrI ACTGG 1 cut(s) 151
BssMI GATC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 246
BstC8I GCNNGC 3 cut(s) 7, 263, 279
BstDEI CTNAG 1 cut(s) 124
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 15, 193
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 144, 242
Cac8I GCNNGC 3 cut(s) 7, 263, 279
Cfr13I GGNCC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 3 cut(s) 93, 271, 283
CviJI RGCY 6 cut(s) 5, 28, 38, 265, 281, 295
CviKI_1 RGCY 6 cut(s) 5, 28, 38, 265, 281, 295
DdeI CTNAG 1 cut(s) 124
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 97
EcoT22I ATGCAT 2 cut(s) 88, 94
FaeI CATG 3 cut(s) 96, 274, 286
FatI CATG 3 cut(s) 92, 270, 282
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 29, 207
Fsp4HI GCNGC 2 cut(s) 29, 207
FspBI CTAG 2 cut(s) 6, 35
GluI GCNGC 2 cut(s) 29, 207
HaeIII GGCC 1 cut(s) 295
Hin1II CATG 3 cut(s) 96, 274, 286
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 109, 242
Hpy8I GTNNAC 2 cut(s) 109, 242
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 4 cut(s) 31, 86, 92, 176
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 96, 274, 286
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 222, 274
LpnPI CCDG 4 cut(s) 24, 132, 165, 247
Lsp1109I GCAGC 2 cut(s) 15, 193
LweI GCATC 2 cut(s) 73, 185
MaeI CTAG 2 cut(s) 6, 35
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 3 cut(s) 10, 157, 328
MflI RGATCY 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 295
MluCI AATT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 4 cut(s) 110, 131, 303, 306
Mox20I TGGCCA 1 cut(s) 295
Mph1103I ATGCAT 2 cut(s) 88, 94
MscI TGGCCA 1 cut(s) 295
MslI CAYNNNNRTG 1 cut(s) 91
Msp20I TGGCCA 1 cut(s) 295
NdeI CATATG 1 cut(s) 88
NdeII GATC 1 cut(s) 44
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 3 cut(s) 96, 274, 286
NlaIV GGNNCC 1 cut(s) 98
NsiI ATGCAT 2 cut(s) 88, 94
PkrI GCNGC 2 cut(s) 30, 208
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
PsuI RGATCY 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 91
SatI GCNGC 2 cut(s) 29, 207
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 97
SetI ASST 5 cut(s) 36, 40, 79, 123, 308
SfaNI GCATC 2 cut(s) 73, 185
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 91
Sse9I AATT 1 cut(s) 298
SspMI CTAG 2 cut(s) 6, 35
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 298
TscAI CASTG 2 cut(s) 151, 249
TseI GCWGC 2 cut(s) 28, 206
TspDTI ATGAA 1 cut(s) 259
TspRI CASTG 2 cut(s) 151, 249
VpaK11BI GGWCC 1 cut(s) 97
XspI CTAG 2 cut(s) 6, 35
Zsp2I ATGCAT 2 cut(s) 88, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.