Rh1AG022800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000499
Physical Location & Seq
Reverse (-)
4182482 .. 4183404
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG022800.1

Sequence Viewer

Length: 489 bp
ATGGAACAGACAAAAGCAAAAGCTGCAGCTGACCTGACAAGACAAATACTATGTAATTCGATCCAAATATCTGAATCTGAAAAGGTACTCGAGGCTCTGAACAGGGCCTTGAAGCGTGTGGAGCAGTCTGAATCTAATGTAAAAGAGATATTTAACAGGAGGCAAGTTCAATATGATGAATATAAGAAATATAAGGAAATGCAGCTGATAGAAACAGAGAGGGTGTTGGATGGGCTAGAGAAAAGTTTGTCTGATGAATCGGGCGACATTAACCTGTACAAAAGGCGCGTGGAGATGGAGAAGACACTTGAAAATCTTAATGTTTTCTGTGAGGCTGTGCATTCTATTCTCGAACCGAAGGACTCTAGTGATGTCTGTCTTGTCAAAGAAGCTCAAGTAATATATTTAGCAATATTATTGGTTGATCATCTTGGCGGACAGAGTGGACAGAAAATGCGAAAAAGGAGAGGGTCACAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.66

Weight (kDa)

6.76

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 55
AfaI GTAC 2 cut(s) 87, 278
AgsI TTSAA 3 cut(s) 112, 170, 311
AluBI AGCT 4 cut(s) 23, 29, 205, 392
AluI AGCT 4 cut(s) 23, 29, 205, 392
AlwI GGATC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 23, 26, 202
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 10, 38, 214
BccI CCATC 2 cut(s) 224, 289
BclI TGATCA 1 cut(s) 424
BfaI CTAG 2 cut(s) 236, 366
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 3 cut(s) 24, 27, 203
BlsI GCNGC 3 cut(s) 25, 28, 204
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 378
BseGI GGATG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 10, 38, 214
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 89
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 2 cut(s) 60, 424
BspACI CCGC 1 cut(s) 435
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 1 cut(s) 288
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 276
BssMI GATC 2 cut(s) 60, 424
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 276
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 2 cut(s) 63, 427
BstMBI GATC 2 cut(s) 60, 424
BstMWI GCNNNNNNNGC 2 cut(s) 23, 121
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 10, 38, 214
BstV2I GAAGAC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 235
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 86, 277
CviJI RGCY 8 cut(s) 23, 29, 95, 107, 205, 235, 335, 392
CviKI_1 RGCY 8 cut(s) 23, 29, 95, 107, 205, 235, 335, 392
CviQI GTAC 2 cut(s) 86, 277
DpnI GATC 2 cut(s) 62, 426
DpnII GATC 2 cut(s) 60, 424
EciI GGCGGA 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 105
FaiI YATR 5 cut(s) 52, 174, 183, 192, 403
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 24, 27, 203
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 24, 27, 203
FspBI CTAG 2 cut(s) 236, 366
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 24, 27, 203
HaeIII GGCC 1 cut(s) 107
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 4 cut(s) 74, 131, 257, 362
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 5 cut(s) 73, 79, 99, 130, 253
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 352
HpyCH4V TGCA 3 cut(s) 26, 202, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 121
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 60, 424
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 47, 88, 142, 287
Lsp1109I GCAGC 3 cut(s) 10, 38, 214
MaeI CTAG 2 cut(s) 236, 366
MaeIII GTNAC 1 cut(s) 471
MalI GATC 2 cut(s) 62, 426
MboI GATC 2 cut(s) 60, 424
MboII GAAGA 1 cut(s) 313
MluCI AATT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 85, 153, 213, 325, 461
MseI TTAA 3 cut(s) 153, 270, 318
MspA1I CMGCKG 2 cut(s) 29, 205
Mva1269I GAATGC 1 cut(s) 340
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 23, 121
NdeII GATC 2 cut(s) 60, 424
NmuCI GTSAC 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 89
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 74, 131, 257
PkrI GCNGC 3 cut(s) 25, 28, 204
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 105
PspXI VCTCGAGB 1 cut(s) 89
PstI CTGCAG 1 cut(s) 28
PvuII CAGCTG 2 cut(s) 29, 205
RsaI GTAC 2 cut(s) 87, 278
RsaNI GTAC 2 cut(s) 86, 277
SaqAI TTAA 3 cut(s) 153, 270, 318
SatI GCNGC 3 cut(s) 24, 27, 203
Sau3AI GATC 2 cut(s) 60, 424
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 356
SetI ASST 7 cut(s) 25, 31, 36, 87, 207, 276, 394
SfcI CTRYAG 1 cut(s) 24
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 89, 393
SmoI CTYRAG 2 cut(s) 89, 393
Sse9I AATT 1 cut(s) 55
SsiI CCGC 1 cut(s) 435
SspI AATATT 1 cut(s) 414
SspMI CTAG 2 cut(s) 236, 366
TaqI TCGA 3 cut(s) 59, 90, 351
TasI AATT 1 cut(s) 55
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 3 cut(s) 74, 131, 257
Tru1I TTAA 3 cut(s) 153, 270, 318
Tru9I TTAA 3 cut(s) 153, 270, 318
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 3 cut(s) 23, 26, 202
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 2 cut(s) 192, 270
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 236, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.