Rw1G001480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000499
Physical Location & Seq
Reverse (-)
2508043 .. 2509081
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001480.1

Sequence Viewer

Length: 555 bp
ATGTCAAGCAAGAACGAAGAGGTTTCGAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAACGATGCAGCTATTGCGTGAGAAACAGTTCTCAGCGACAAAAGCAAAAGCTGCAGCTGACCTGACAAGACAAATACTATGTAATTCGATCCAAATATCTGAATCTGAAAAGATACTCGAGGCTCTGAACAGGGCCTTGAAGCGTGTGGAGCAGTCTGAATCTAATGTAAAAGAGATATTTGACAGGAGGCAAGTTCAATATGATGAATATAAGAAATATAAGGAAATGCAGCTGATAAAAACAGAGAGGGTGTTGGATGGGCTAGAGAAAAGTTTGTCTGAGGAATCGGGCGACATTAACCTGTACAAAAGGCGCGAGGAGATGGAGAAGACACTTGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTATTCTCGAACCGAAGGACTCTAGTGATGTCTGTCTTGTCAAAGAAGCTCAGGTTGATCATCTTGGCGGACAGAGTGGACAGAAAATGCGAAAAAGGAGAGGGTCACAGAAGTCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.34

Weight (kDa)

7.58

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 501
AclWI GGATC 1 cut(s) 145
AfaI GTAC 1 cut(s) 368
AgsI TTSAA 4 cut(s) 50, 202, 260, 401
AluBI AGCT 6 cut(s) 31, 73, 113, 119, 295, 482
AluI AGCT 6 cut(s) 31, 73, 113, 119, 295, 482
AlwI GGATC 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 4 cut(s) 70, 113, 116, 292
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 195
AsuII TTCGAA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 4 cut(s) 82, 100, 128, 304
BccI CCATC 2 cut(s) 314, 379
BclI TGATCA 1 cut(s) 490
BfaI CTAG 2 cut(s) 326, 456
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 4 cut(s) 71, 114, 117, 293
BlsI GCNGC 4 cut(s) 72, 115, 118, 294
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 26
BseGI GGATG 1 cut(s) 325
BseMII CTCAG 3 cut(s) 108, 333, 497
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 4 cut(s) 82, 100, 128, 304
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 179
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 26
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 2 cut(s) 150, 490
BspACI CCGC 1 cut(s) 501
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 3 cut(s) 107, 334, 496
BspFNI CGCG 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 366
BssMI GATC 2 cut(s) 150, 490
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 2 cut(s) 76, 113
BstAUI TGTACA 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 94, 342, 483
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 153, 493
BstMBI GATC 2 cut(s) 150, 490
BstMWI GCNNNNNNNGC 4 cut(s) 76, 104, 113, 211
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 4 cut(s) 82, 100, 128, 304
BstV2I GAAGAC 1 cut(s) 398
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 325
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 367
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 94, 342, 483
DpnI GATC 2 cut(s) 152, 492
DpnII GATC 2 cut(s) 150, 490
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 195
FaiI YATR 4 cut(s) 142, 264, 273, 282
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 4 cut(s) 71, 114, 117, 293
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 4 cut(s) 71, 114, 117, 293
FspBI CTAG 2 cut(s) 326, 456
GlaI GCGC 1 cut(s) 377
GluI GCNGC 4 cut(s) 71, 114, 117, 293
HaeIII GGCC 1 cut(s) 197
HhaI GCGC 1 cut(s) 378
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 164, 221, 347, 452
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 5 cut(s) 163, 169, 189, 220, 343
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 70, 116, 292
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 104, 113, 211
HpyF3I CTNAG 3 cut(s) 94, 342, 483
HspAI GCGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 150, 490
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 137, 178, 232, 377, 470
Lsp1109I GCAGC 4 cut(s) 82, 100, 128, 304
LweI GCATC 1 cut(s) 57
MaeI CTAG 2 cut(s) 326, 456
MaeIII GTNAC 1 cut(s) 537
MalI GATC 2 cut(s) 152, 492
MboI GATC 2 cut(s) 150, 490
MboII GAAGA 2 cut(s) 29, 403
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 9 cut(s) 13, 52, 175, 243, 303, 337, 373, 415, 527
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 3 cut(s) 33, 360, 408
MspA1I CMGCKG 2 cut(s) 119, 295
Mva1269I GAATGC 1 cut(s) 56
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 4 cut(s) 76, 104, 113, 211
NdeII GATC 2 cut(s) 150, 490
NmuCI GTSAC 1 cut(s) 537
NspV TTCGAA 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 179
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 164, 221, 347
PkrI GCNGC 4 cut(s) 72, 115, 118, 294
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 195
PspXI VCTCGAGB 1 cut(s) 179
PstI CTGCAG 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 119, 295
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 3 cut(s) 33, 360, 408
SatI GCNGC 4 cut(s) 71, 114, 117, 293
Sau3AI GATC 2 cut(s) 150, 490
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 179
SfuI TTCGAA 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 501
SspMI CTAG 2 cut(s) 326, 456
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 4 cut(s) 26, 149, 180, 441
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 3 cut(s) 164, 221, 347
Tru1I TTAA 3 cut(s) 33, 360, 408
Tru9I TTAA 3 cut(s) 33, 360, 408
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 4 cut(s) 70, 113, 116, 292
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 2 cut(s) 326, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.