Rh1BG016300

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000499
Physical Location & Seq
Forward (+)
2519950 .. 2521635
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG016300.1

Sequence Viewer

Length: 903 bp
ATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTACTCTCAAATCGAAGGAGTCTAGCCGCGTCTCTCTTGTCAAAGAATCTCAGATTATTAAATGTCAAGAGGAATTGCTGCAGCTATTGCACGAGAAACAGTGGTGGTCTGACAAATCAAAACTTATGGAACAAAAAAAAAAAAGCGTTGTAGCTGACTTGGGAAGACATTCTATCCAAACATCTGAATTCAAAAAGGAACTCGACGATCTGAATAAGGCCTTGAAGCTTGCGGGGAAGTCTGAAACCAACGTAAGACTTATCCTTGGACGTACTCAGACTCAGGTTACTGGCATTGGCACTCTACCTCGCATGTCGTTGGTCTATGTGTCTCTCTACATGGCATTTCTTGTTCTACTTGCTTTTCGGGTTATATCATATTTCGATGTCACGGATGGTACCTTCATTGACGCACTTTATATTACTTCCGTTACGCTATTCACTGTGGGTTTTGGGGATATTGCTCCTAAGTGGAGCGGTACTCTACTTTTCTGTGATATGTTGGGTATGTTTGGATGTATCATACCGTCTATCTACAGCCATTTTGTGGGTCAGATGGCAGATTGGTTGTATCAGAGGTATCTTTCTGGTGTGCAGAGTCGCCATAGGAGACGCTCCTATCTGATGCTTTCAGTTGCTGGCACGATTTTAGTGCTTATACTTTCAAGGATGGCAGCCATTTATTATTTTGAGGGGGAGCGACTTCGTAGACAGTTTCATACTCATACCTCTGCACGGATCATTCTTGACATATTTCACCTGACCGTTATGACCATGACTATGATTGGATATGGAGATTTCGCATTTGCTAGTGCACATGGGAGAGCATTGGCCGCATTATGGATTCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0003824 GO:0004788 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005887 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009108 GO:0009229 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016772 GO:0016778 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0034641 GO:0042357 GO:0042391 GO:0042592 GO:0042723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046483 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071704 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072527 GO:0072528 GO:0090407 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

300

Amino Acids

34.28

Weight (kDa)

9.34

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 132 - 202 9.5e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 757
AccII CGCG 1 cut(s) 78
AciI CCGC 4 cut(s) 76, 281, 525, 882
AclWI GGATC 1 cut(s) 794
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 3 cut(s) 322, 448, 529
AfiI CCNNNNNNNGG 3 cut(s) 595, 783, 888
AgsI TTSAA 3 cut(s) 241, 274, 714
AluBI AGCT 3 cut(s) 133, 203, 277
AluI AGCT 3 cut(s) 133, 203, 277
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 4 cut(s) 4, 85, 384, 652
Alw44I GTGCAC 1 cut(s) 861
AlwI GGATC 1 cut(s) 794
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 2 cut(s) 267, 879
ApaLI GTGCAC 1 cut(s) 861
ApeKI GCWGC 3 cut(s) 127, 130, 722
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 217
Asp718I GGTACC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 797
BaeGI GKGCMC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 446
BauI CACGAG 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 3 cut(s) 114, 142, 734
BccI CCATC 3 cut(s) 437, 598, 712
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BcoDI GTCTC 4 cut(s) 4, 85, 384, 652
BfaI CTAG 3 cut(s) 14, 72, 858
BfmI CTRYAG 2 cut(s) 128, 583
BisI GCNGC 5 cut(s) 76, 128, 131, 723, 882
BlsI GCNGC 5 cut(s) 77, 129, 132, 724, 883
BmiI GGNNCC 1 cut(s) 448
BmsI GCATC 1 cut(s) 663
BpiI GAAGAC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 3 cut(s) 595, 783, 888
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 3 cut(s) 448, 569, 723
BseLI CCNNNNNNNGG 3 cut(s) 595, 783, 888
BseMII CTCAG 3 cut(s) 113, 338, 344
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 3 cut(s) 114, 142, 734
BsgI GTGCAG 2 cut(s) 662, 765
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 269, 881
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 865
BslI CCNNNNNNNGG 3 cut(s) 595, 783, 888
BsmAI GTCTC 4 cut(s) 4, 85, 384, 652
BsmBI CGTCTC 2 cut(s) 85, 652
BsnI GGCC 2 cut(s) 269, 881
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 2 cut(s) 256, 786
BspACI CCGC 4 cut(s) 76, 281, 525, 882
BspANI GGCC 2 cut(s) 269, 881
BspCNI CTCAG 3 cut(s) 112, 337, 343
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 448
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 525
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 2 cut(s) 256, 786
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 140
Bst4CI ACNGT 5 cut(s) 150, 493, 576, 762, 814
Bst6I CTCTTC 1 cut(s) 2
BstAPI GCANNNNNTGC 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 279, 688
BstDEI CTNAG 4 cut(s) 99, 324, 330, 516
BstF5I GGATG 3 cut(s) 448, 569, 723
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 259, 789
BstMAI GTCTC 4 cut(s) 4, 85, 384, 652
BstMBI GATC 2 cut(s) 256, 786
BstMWI GCNNNNNNNGC 2 cut(s) 136, 881
BstNSI RCATGY 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 128, 583
BstSLI GKGCMC 1 cut(s) 865
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 114, 142, 734
BstV2I GAAGAC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 269, 881
BtsCI GGATG 3 cut(s) 448, 569, 723
BtsIMutI CAGTG 2 cut(s) 155, 489
Cac8I GCNNGC 2 cut(s) 279, 688
CaiI CAGNNNCTG 1 cut(s) 686
CseI GACGC 3 cut(s) 67, 467, 669
Csp6I GTAC 3 cut(s) 321, 447, 528
CviAII CATG 4 cut(s) 361, 388, 823, 866
CviJI RGCY 9 cut(s) 41, 75, 133, 203, 269, 277, 588, 725, 881
CviKI_1 RGCY 9 cut(s) 41, 75, 133, 203, 269, 277, 588, 725, 881
CviQI GTAC 3 cut(s) 321, 447, 528
DdeI CTNAG 4 cut(s) 99, 324, 330, 516
DpnI GATC 2 cut(s) 258, 788
DpnII GATC 2 cut(s) 256, 786
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco130I CCWWGG 1 cut(s) 313
Eco147I AGGCCT 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
Esp3I CGTCTC 2 cut(s) 85, 652
FaeI CATG 4 cut(s) 364, 391, 826, 869
FatI CATG 4 cut(s) 360, 387, 822, 865
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 757
Fnu4HI GCNGC 5 cut(s) 76, 128, 131, 723, 882
FokI GGATG 3 cut(s) 455, 576, 730
Fsp4HI GCNGC 5 cut(s) 76, 128, 131, 723, 882
FspBI CTAG 3 cut(s) 14, 72, 858
GluI GCNGC 5 cut(s) 76, 128, 131, 723, 882
HaeIII GGCC 2 cut(s) 269, 881
HgaI GACGC 3 cut(s) 67, 467, 669
Hin1II CATG 4 cut(s) 364, 391, 826, 869
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 5 cut(s) 68, 95, 328, 646, 892
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 2 cut(s) 758, 863
Hpy188I TCNGA 9 cut(s) 102, 160, 235, 261, 292, 327, 603, 624, 672
Hpy188III TCNNGA 2 cut(s) 116, 794
Hpy8I GTNNAC 2 cut(s) 758, 863
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 58, 460
HpyCH4III ACNGT 5 cut(s) 150, 493, 576, 762, 814
HpyCH4IV ACGT 2 cut(s) 300, 319
HpyCH4V TGCA 5 cut(s) 130, 139, 643, 782, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 881
HpyF3I CTNAG 4 cut(s) 99, 324, 330, 516
HpySE526I ACGT 2 cut(s) 300, 319
Hsp92II CATG 4 cut(s) 364, 391, 826, 869
KpnI GGTACC 1 cut(s) 450
Kzo9I GATC 2 cut(s) 256, 786
LmnI GCTCC 4 cut(s) 517, 522, 668, 745
LpnPI CCDG 5 cut(s) 317, 324, 621, 672, 821
Lsp1109I GCAGC 3 cut(s) 114, 142, 734
LweI GCATC 1 cut(s) 663
MaeI CTAG 3 cut(s) 14, 72, 858
MaeII ACGT 2 cut(s) 300, 319
MaeIII GTNAC 3 cut(s) 334, 436, 478
MalI GATC 2 cut(s) 258, 788
MbiI CCGCTC 1 cut(s) 525
MboI GATC 2 cut(s) 256, 786
MboII GAAGA 2 cut(s) 19, 225
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 2 cut(s) 122, 236
MlyI GAGTC 3 cut(s) 77, 322, 655
MnlI CCTC 6 cut(s) 31, 112, 366, 618, 733, 787
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 3 cut(s) 24, 108, 901
MslI CAYNNNNRTG 1 cut(s) 827
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 136, 881
NdeII GATC 2 cut(s) 256, 786
NlaIII CATG 4 cut(s) 364, 391, 826, 869
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 364
PceI AGGCCT 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 95, 892
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 5 cut(s) 77, 129, 132, 724, 883
PleI GAGTC 3 cut(s) 76, 322, 654
PpsI GAGTC 3 cut(s) 76, 322, 654
PspN4I GGNNCC 1 cut(s) 448
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 686
RsaI GTAC 3 cut(s) 322, 448, 529
RsaNI GTAC 3 cut(s) 321, 447, 528
RseI CAYNNNNRTG 1 cut(s) 827
SaqAI TTAA 3 cut(s) 24, 108, 901
SatI GCNGC 5 cut(s) 76, 128, 131, 723, 882
Sau3AI GATC 2 cut(s) 256, 786
SchI GAGTC 3 cut(s) 77, 322, 655
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 1 cut(s) 663
SfcI CTRYAG 2 cut(s) 128, 583
SmiMI CAYNNNNRTG 1 cut(s) 827
Sse9I AATT 2 cut(s) 122, 236
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 4 cut(s) 76, 281, 525, 882
SspMI CTAG 3 cut(s) 14, 72, 858
StuI AGGCCT 1 cut(s) 269
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 5 cut(s) 150, 493, 576, 762, 814
TaiI ACGT 2 cut(s) 303, 322
TaqI TCGA 3 cut(s) 62, 252, 432
TasI AATT 2 cut(s) 122, 236
TauI GCSGC 2 cut(s) 78, 884
TfiI GAWTC 2 cut(s) 95, 892
Tru1I TTAA 3 cut(s) 24, 108, 901
Tru9I TTAA 3 cut(s) 24, 108, 901
TscAI CASTG 2 cut(s) 155, 496
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 3 cut(s) 127, 130, 722
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 2 cut(s) 442, 755
TspGWI ACGGA 3 cut(s) 455, 466, 799
TspRI CASTG 2 cut(s) 155, 496
Van91I CCANNNNNTGG 1 cut(s) 595
VneI GTGCAC 1 cut(s) 861
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 3 cut(s) 14, 72, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.