Rroxscaffold_4G00330950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000499
Physical Location & Seq
Reverse (-)
64754241 .. 64756329
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330950.1

Sequence Viewer

Length: 918 bp
ATGTCAAGCAAGAACGAAGAGGTTTCAAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAATGTTGCAGCTATTGCAGGAGAAACAGTGGTGGCCTAACAAATCTAAACTTATGGAACGGACAAAAGAAAGAGTTGTAGCTGATCTGAGAAGACATTCGGTCCAAACATCTGAATTTGAAAAGGAACTCAACGATCTGAACAATGCCTTGAAACGTGAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACACGATGCAAGCTGAGCATGATGAATATAGGAAAGCTAAGGAAAAACAGTTGACAGAAGTAGAGTGTTCGTTGGATACTGTAGAGAAGAGATTGTTAGTGACGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTTTGTGAGGCTGCGTATTCTACTCTCAAATCGAAGGAGTCTAGCCACGTCTTTCTTGTTAAAGAAGCTCAGCTGATATATTGTAGCAATATCATTTCTGACTTGGGAAGACATTCTATCCAAACATCTAAATTAAAAAAGGAACTCGACGATCTGAATAAGGCCTTGAAGCTTGCGGGGAAGTCTGAAACCAACGTAAGACTTGTCCTTGGACGTACTCAGACTCAGGTTACTGACATTGGCACTCTACCTCGCATGTCGTTGGTCTACGTGTCACTCTACATGGCATTTCTTGTTCTACTTGCTTTTCGGGTTATATCATATTTCGATGTCGCGGATGGTACCTTCATTGACGCACTTTATATTACTTCTGTTACGCTATTCACTGTGGGTTTTGGGGATATTGCTCCTAAGTGGAGCGGTACTCTACTTTTCTGTGATATGTTGGGTCTGTTTGGATGTATCATACCGTCTATCTACAGCCATTTTGTGGGTCAGATGGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

35.09

Weight (kDa)

5.73

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 233 - 302 3.5e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 749
AccB7I CCANNNNNTGG 1 cut(s) 898
AccBSI CCGCTC 1 cut(s) 828
AccI GTMKAC 1 cut(s) 675
AccII CGCG 2 cut(s) 372, 743
AciI CCGC 3 cut(s) 584, 743, 828
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 3 cut(s) 625, 751, 832
AfiI CCNNNNNNNGG 1 cut(s) 898
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 5 cut(s) 27, 50, 182, 214, 577
AhdI GACNNNNNGTC 1 cut(s) 161
AjiI CACGTC 1 cut(s) 457
AluBI AGCT 8 cut(s) 31, 73, 143, 269, 293, 476, 481, 580
AluI AGCT 8 cut(s) 31, 73, 143, 269, 293, 476, 481, 580
Alw26I GTCTC 1 cut(s) 382
AoxI GGCC 2 cut(s) 95, 570
ApeKI GCWGC 2 cut(s) 70, 419
ApoI RAATTY 1 cut(s) 176
Asp700I GAANNNNTTC 2 cut(s) 157, 520
Asp718I GGTACC 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 749
BbsI GAAGAC 2 cut(s) 160, 523
BbvI GCAGC 2 cut(s) 82, 406
BccI CCATC 3 cut(s) 373, 740, 901
BciVI GTATCC 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 362, 392, 450
BfmI CTRYAG 2 cut(s) 336, 886
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 2 cut(s) 71, 420
BlpI GCTNAGC 2 cut(s) 270, 477
BlsI GCNGC 2 cut(s) 72, 421
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 751
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 2 cut(s) 160, 523
BplI GAGNNNNNCTC 2 cut(s) 817, 849
Bpu10I CCTNAGC 1 cut(s) 294
Bpu1102I GCTNAGC 2 cut(s) 270, 477
BsaAI YACGTR 1 cut(s) 679
BsaJI CCNNGG 1 cut(s) 616
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 898
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 751, 872
BseLI CCNNNNNNNGG 1 cut(s) 898
BseMII CTCAG 5 cut(s) 140, 261, 491, 641, 647
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 82, 406
Bsh1236I CGCG 2 cut(s) 372, 743
BshFI GGCC 2 cut(s) 97, 572
BshNI GGYRCC 1 cut(s) 749
BslI CCNNNNNNNGG 1 cut(s) 898
BsmAI GTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 97, 572
Bsp143I GATC 3 cut(s) 145, 196, 559
Bsp1720I GCTNAGC 2 cut(s) 270, 477
BspACI CCGC 3 cut(s) 584, 743, 828
BspANI GGCC 2 cut(s) 97, 572
BspCNI CTCAG 5 cut(s) 141, 262, 490, 640, 646
BspFNI CGCG 2 cut(s) 372, 743
BspLI GGNNCC 1 cut(s) 751
BspT107I GGYRCC 1 cut(s) 749
BsrBI CCGCTC 1 cut(s) 828
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 3 cut(s) 145, 196, 559
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 5 cut(s) 90, 306, 337, 796, 879
Bst6I CTCTTC 3 cut(s) 12, 338, 380
BstAPI GCANNNNNTGC 1 cut(s) 76
BstBAI YACGTR 1 cut(s) 679
BstC8I GCNNGC 2 cut(s) 267, 582
BstDEI CTNAG 7 cut(s) 149, 270, 294, 477, 627, 633, 819
BstF5I GGATG 2 cut(s) 751, 872
BstFNI CGCG 2 cut(s) 372, 743
BstKTI GATC 3 cut(s) 148, 199, 562
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 3 cut(s) 145, 196, 559
BstMWI GCNNNNNNNGC 2 cut(s) 76, 271
BstNSI RCATGY 1 cut(s) 667
BstSFI CTRYAG 2 cut(s) 336, 886
BstUI CGCG 2 cut(s) 372, 743
BstV1I GCAGC 2 cut(s) 82, 406
BstV2I GAAGAC 2 cut(s) 160, 523
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 2 cut(s) 97, 572
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 751, 872
BtsIMutI CAGTG 2 cut(s) 95, 792
Cac8I GCNNGC 2 cut(s) 267, 582
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 2 cut(s) 367, 770
Csp6I GTAC 3 cut(s) 624, 750, 831
CviAII CATG 3 cut(s) 275, 664, 691
CviQI GTAC 3 cut(s) 624, 750, 831
DdeI CTNAG 7 cut(s) 149, 270, 294, 477, 627, 633, 819
DpnI GATC 3 cut(s) 147, 198, 561
DpnII GATC 3 cut(s) 145, 196, 559
DriI GACNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 3 cut(s) 12, 338, 380
Eam1105I GACNNNNNGTC 1 cut(s) 161
EarI CTCTTC 3 cut(s) 12, 338, 380
Eco130I CCWWGG 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 3 cut(s) 278, 667, 694
FatI CATG 3 cut(s) 274, 663, 690
FauI CCCGC 1 cut(s) 577
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 2 cut(s) 71, 420
FokI GGATG 2 cut(s) 758, 879
Fsp4HI GCNGC 2 cut(s) 71, 420
FspBI CTAG 3 cut(s) 362, 392, 450
GluI GCNGC 2 cut(s) 71, 420
HaeIII GGCC 2 cut(s) 97, 572
HgaI GACGC 2 cut(s) 367, 770
Hin1II CATG 3 cut(s) 278, 667, 694
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 2 cut(s) 29, 578
HinfI GANTC 2 cut(s) 446, 631
Hpy166II GTNNAC 2 cut(s) 309, 676
Hpy188I TCNGA 9 cut(s) 150, 175, 201, 232, 508, 564, 595, 630, 906
Hpy8I GTNNAC 2 cut(s) 309, 676
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 436, 763
HpyCH4III ACNGT 5 cut(s) 90, 306, 337, 796, 879
HpyCH4IV ACGT 5 cut(s) 217, 456, 603, 622, 678
HpyCH4V TGCA 3 cut(s) 70, 79, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 271
HpyF3I CTNAG 7 cut(s) 149, 270, 294, 477, 627, 633, 819
HpySE526I ACGT 5 cut(s) 217, 456, 603, 622, 678
Hsp92II CATG 3 cut(s) 278, 667, 694
KpnI GGTACC 1 cut(s) 753
Kzo9I GATC 3 cut(s) 145, 196, 559
LmnI GCTCC 2 cut(s) 820, 825
LpnPI CCDG 2 cut(s) 65, 620
Lsp1109I GCAGC 2 cut(s) 82, 406
LweI GCATC 1 cut(s) 252
MaeI CTAG 3 cut(s) 362, 392, 450
MaeII ACGT 5 cut(s) 217, 456, 603, 622, 678
MaeIII GTNAC 4 cut(s) 355, 637, 681, 781
MalI GATC 3 cut(s) 147, 198, 561
MbiI CCGCTC 1 cut(s) 828
MboI GATC 3 cut(s) 145, 196, 559
MboII GAAGA 5 cut(s) 29, 165, 355, 397, 528
MluCI AATT 2 cut(s) 176, 539
MlyI GAGTC 2 cut(s) 455, 625
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 13, 52, 214, 409, 669
MroXI GAANNNNTTC 2 cut(s) 157, 520
MseI TTAA 4 cut(s) 33, 402, 468, 542
MspA1I CMGCKG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 56
MvnI CGCG 2 cut(s) 372, 743
MwoI GCNNNNNNNGC 2 cut(s) 76, 271
NdeII GATC 3 cut(s) 145, 196, 559
NlaIII CATG 3 cut(s) 278, 667, 694
NlaIV GGNNCC 1 cut(s) 751
NmuCI GTSAC 2 cut(s) 355, 681
NspI RCATGY 1 cut(s) 667
PceI AGGCCT 1 cut(s) 572
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 157, 520
PflMI CCANNNNNTGG 1 cut(s) 898
PkrI GCNGC 2 cut(s) 72, 421
PleI GAGTC 2 cut(s) 454, 625
PpsI GAGTC 2 cut(s) 454, 625
Ppu21I YACGTR 1 cut(s) 679
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 3 cut(s) 625, 751, 832
RsaNI GTAC 3 cut(s) 624, 750, 831
SaqAI TTAA 4 cut(s) 33, 402, 468, 542
SatI GCNGC 2 cut(s) 71, 420
Sau3AI GATC 3 cut(s) 145, 196, 559
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 2 cut(s) 455, 625
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 2 cut(s) 336, 886
SinI GGWCC 1 cut(s) 163
Sse9I AATT 2 cut(s) 176, 539
SseBI AGGCCT 1 cut(s) 572
SsiI CCGC 3 cut(s) 584, 743, 828
SspMI CTAG 3 cut(s) 362, 392, 450
StuI AGGCCT 1 cut(s) 572
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 5 cut(s) 90, 306, 337, 796, 879
TaiI ACGT 5 cut(s) 220, 459, 606, 625, 681
TaqI TCGA 3 cut(s) 440, 555, 735
TaqII GACCGA 1 cut(s) 151
TasI AATT 2 cut(s) 176, 539
Tru1I TTAA 4 cut(s) 33, 402, 468, 542
Tru9I TTAA 4 cut(s) 33, 402, 468, 542
TscAI CASTG 2 cut(s) 95, 799
TseFI GTSAC 2 cut(s) 355, 681
TseI GCWGC 2 cut(s) 70, 419
Tsp45I GTSAC 2 cut(s) 355, 681
TspDTI ATGAA 2 cut(s) 294, 745
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 95, 799
Van91I CCANNNNNTGG 1 cut(s) 898
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 176
XceI RCATGY 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 675
XmnI GAANNNNTTC 2 cut(s) 157, 520
XspI CTAG 3 cut(s) 362, 392, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.