Rh1DG020800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
3242820 .. 3243492
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG020800.1

Sequence Viewer

Length: 348 bp
ATGGAGGCTCTGAAAAAGCAATTGCAAGAGGAGTTTGAGGCACTGCATGGCCAGATTGCCAAGATTGTTGGGGACAATGAGAAAGAATGGAAGACGATCGAGAAGCAAAGAGAAGAGAGGAAATTGATGGGAATGCGAGCCAAAATGTCGGTAGGATCTTCCGATGCAGAGGGTAAGGTTGATTTGGAAGACATTCAGCTTGTTTGGGATGGCTTTAGGTTGATGGGCAAGGGCTCCATGTTGATGGACATGAGATTGAGGAGGATGGGAAATAGATTGAGGAAGATGGGAACGCTATTCAGGTTGATCAGCATTGGGAGTCGTTGGAGAATCAAATTAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.5

Weight (kDa)

10.12

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 49
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AlwI GGATC 1 cut(s) 163
AoxI GGCC 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 98, 195
BccI CCATC 6 cut(s) 121, 203, 217, 238, 259, 280
BclI TGATCA 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 98, 195
BseGI GGATG 2 cut(s) 214, 270
BseRI GAGGAG 2 cut(s) 44, 274
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 96, 155, 306
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 163
BssMI GATC 3 cut(s) 96, 155, 306
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 138
BstF5I GGATG 2 cut(s) 214, 270
BstKTI GATC 3 cut(s) 99, 158, 309
BstMBI GATC 3 cut(s) 96, 155, 306
BstMCI CGRYCG 1 cut(s) 99
BstV2I GAAGAC 2 cut(s) 98, 195
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 2 cut(s) 214, 270
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 3 cut(s) 47, 238, 250
CviJI RGCY 6 cut(s) 8, 51, 140, 199, 213, 234
CviKI_1 RGCY 6 cut(s) 8, 51, 140, 199, 213, 234
DpnI GATC 3 cut(s) 98, 157, 308
DpnII GATC 3 cut(s) 96, 155, 306
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 3 cut(s) 50, 241, 253
FaiI YATR 3 cut(s) 48, 239, 251
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 46, 237, 249
FbaI TGATCA 1 cut(s) 306
FokI GGATG 2 cut(s) 221, 277
FriOI GRGCYC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 3 cut(s) 50, 241, 253
HinfI GANTC 2 cut(s) 319, 330
Hpy188I TCNGA 2 cut(s) 12, 163
Hpy188III TCNNGA 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 25, 46, 167
Hsp92II CATG 3 cut(s) 50, 241, 253
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 3 cut(s) 96, 155, 306
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 2 cut(s) 65, 286
LweI GCATC 1 cut(s) 154
MalI GATC 3 cut(s) 98, 157, 308
MboI GATC 3 cut(s) 96, 155, 306
MboII GAAGA 5 cut(s) 103, 125, 150, 200, 295
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 4 cut(s) 20, 122, 335, 343
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 7 cut(s) 22, 31, 111, 163, 252, 255, 273
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 51
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 51
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 138
NdeII GATC 3 cut(s) 96, 155, 306
NlaIII CATG 3 cut(s) 50, 241, 253
NlaIV GGNNCC 1 cut(s) 235
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 330
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 155
PvuI CGATCG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 338
Sau3AI GATC 3 cut(s) 96, 155, 306
SchI GAGTC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 236
SetI ASST 4 cut(s) 180, 201, 221, 305
SfaNI GCATC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 4 cut(s) 20, 122, 335, 343
TaqI TCGA 1 cut(s) 99
TasI AATT 4 cut(s) 20, 122, 335, 343
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 48
TspRI CASTG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.