RLG00000030658

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000499
Physical Location & Seq
Forward (+)
65213336 .. 65217177
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030658

Sequence Viewer

Length: 663 bp
ATGAAGCAGGCTGAGCTTCATAATCCAATTAATCGTCCAGATTTGAAAGTGTCGTACAAAGCAAACTTCCGATTTCAATCTGCTTCTAATAACTTCGGACTCTCAATTAGGGGCAGGATGTCAAGCAGGGGCAAGGTTTCGAATCTTAAAGAAAAGATTATTAAATGCCAAGACGAAACGCTGCAGCTATTGCAGGAGAAACAGATGTGGTCTGAAAAATCCAAAATTATCGAACAGACAGAAGCTGTCCTGAGAAGAGAAAAACTATGCAATTCGATCCAACCATCTAAATTTGAAAAGGAACTTGAGGATCTGAAAAAGGCCTTGAAGAATGAGGAGGAGAATGAATCCGCAATAAAAGAGATTTTTGACCGTAGGCAAGTTAGCTATGCTGAATATAAGAAATCTATGGATTTACAGCTGATAAAAATTGAGCGAAACTTAGTTGAGCTAGGGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTTAAAAATCTTGATGTCTTCTGTGGGGCTATGTATTCTACTCTCGAATCGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGCTTGATCATCCTGGTGGACAGAATGGACAGAAAACACGAAAAAGGCGAGGTTCGAAGAAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.47

Weight (kDa)

9.6

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 351
AclWI GGATC 2 cut(s) 271, 318
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 4 cut(s) 46, 77, 296, 328
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 8 cut(s) 16, 187, 245, 387, 421, 451, 590, 595
AluI AGCT 8 cut(s) 16, 187, 245, 387, 421, 451, 590, 595
Alw26I GTCTC 2 cut(s) 496, 577
AlwI GGATC 2 cut(s) 271, 318
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 181, 184
ApoI RAATTY 1 cut(s) 290
AseI ATTAAT 1 cut(s) 30
AsuII TTCGAA 2 cut(s) 140, 647
BbsI GAAGAC 1 cut(s) 514
BbvI GCAGC 2 cut(s) 168, 196
BccI CCATC 2 cut(s) 292, 487
BciT130I CCWGG 1 cut(s) 606
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 2 cut(s) 496, 577
BfaI CTAG 2 cut(s) 452, 564
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 182, 185
BlpI GCTNAGC 2 cut(s) 12, 591
BlsI GCNGC 2 cut(s) 183, 186
Bme1390I CCNGG 1 cut(s) 606
BmrFI CCNGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 514
Bpu1102I GCTNAGC 2 cut(s) 12, 591
Bpu14I TTCGAA 2 cut(s) 140, 647
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 1 cut(s) 606
BseGI GGATG 2 cut(s) 123, 601
BseJI GATNNNNATC 1 cut(s) 76
BseMII CTCAG 1 cut(s) 242
BseRI GAGGAG 2 cut(s) 350, 353
BseXI GCAGC 2 cut(s) 168, 196
BshFI GGCC 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 496, 577
BsnI GGCC 1 cut(s) 323
Bsp119I TTCGAA 2 cut(s) 140, 647
Bsp143I GATC 3 cut(s) 276, 310, 598
Bsp1720I GCTNAGC 2 cut(s) 12, 591
BspACI CCGC 1 cut(s) 351
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 2 cut(s) 4, 243
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 2 cut(s) 271, 318
BspT104I TTCGAA 2 cut(s) 140, 647
BssMI GATC 3 cut(s) 276, 310, 598
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 374, 474
Bst6I CTCTTC 2 cut(s) 250, 494
BstAPI GCANNNNNTGC 1 cut(s) 190
BstBI TTCGAA 2 cut(s) 140, 647
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 5 cut(s) 12, 251, 442, 591, 657
BstF5I GGATG 2 cut(s) 123, 601
BstKTI GATC 3 cut(s) 279, 313, 601
BstMAI GTCTC 2 cut(s) 496, 577
BstMBI GATC 3 cut(s) 276, 310, 598
BstMWI GCNNNNNNNGC 3 cut(s) 13, 190, 483
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 604
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 168, 196
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 123, 601
Cac8I GCNNGC 1 cut(s) 9
CaiI CAGNNNCTG 1 cut(s) 245
CseI GACGC 1 cut(s) 492
Csp6I GTAC 1 cut(s) 55
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 5 cut(s) 12, 251, 442, 591, 657
DpnI GATC 3 cut(s) 278, 312, 600
DpnII GATC 3 cut(s) 276, 310, 598
Eam1104I CTCTTC 2 cut(s) 250, 494
EarI CTCTTC 2 cut(s) 250, 494
Eco147I AGGCCT 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 604
FaiI YATR 7 cut(s) 21, 268, 390, 399, 410, 488, 536
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 182, 185
FokI GGATG 2 cut(s) 130, 588
Fsp4HI GCNGC 2 cut(s) 182, 185
FspBI CTAG 2 cut(s) 452, 564
GluI GCNGC 2 cut(s) 182, 185
HaeIII GGCC 1 cut(s) 323
HgaI GACGC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 6 cut(s) 99, 142, 347, 462, 551, 560
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 4 cut(s) 71, 98, 214, 315
Hpy188III TCNNGA 5 cut(s) 38, 250, 459, 515, 548
Hpy8I GTNNAC 1 cut(s) 611
HpyAV CCTTC 2 cut(s) 550, 587
HpyCH4III ACNGT 2 cut(s) 374, 474
HpyCH4V TGCA 4 cut(s) 184, 193, 270, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 190, 483
HpyF3I CTNAG 5 cut(s) 12, 251, 442, 591, 657
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 3 cut(s) 276, 310, 598
LpnPI CCDG 8 cut(s) 51, 100, 112, 179, 263, 444, 591, 618
Lsp1109I GCAGC 2 cut(s) 168, 196
MaeI CTAG 2 cut(s) 452, 564
MalI GATC 3 cut(s) 278, 312, 600
MboI GATC 3 cut(s) 276, 310, 598
MboII GAAGA 5 cut(s) 267, 340, 511, 514, 661
MflI RGATCY 1 cut(s) 310
MluCI AATT 6 cut(s) 27, 105, 225, 271, 290, 429
MlyI GAGTC 3 cut(s) 93, 471, 569
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 4 cut(s) 301, 328, 331, 635
MseI TTAA 4 cut(s) 30, 147, 162, 507
MslI CAYNNNNRTG 2 cut(s) 491, 606
MspA1I CMGCKG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 13, 190, 483
NdeII GATC 3 cut(s) 276, 310, 598
NspV TTCGAA 2 cut(s) 140, 647
PceI AGGCCT 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PfeI GAWTC 3 cut(s) 142, 347, 551
PkrI GCNGC 2 cut(s) 183, 186
PleI GAGTC 3 cut(s) 93, 470, 568
PpsI GAGTC 3 cut(s) 93, 470, 568
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 421
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 491, 606
SaqAI TTAA 4 cut(s) 30, 147, 162, 507
SatI GCNGC 2 cut(s) 182, 185
Sau3AI GATC 3 cut(s) 276, 310, 598
SchI GAGTC 3 cut(s) 93, 471, 569
ScrFI CCNGG 1 cut(s) 606
SfcI CTRYAG 1 cut(s) 182
SfuI TTCGAA 2 cut(s) 140, 647
SmiMI CAYNNNNRTG 2 cut(s) 491, 606
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 6 cut(s) 27, 105, 225, 271, 290, 429
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 1 cut(s) 351
SspMI CTAG 2 cut(s) 452, 564
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 604
TaaI ACNGT 2 cut(s) 374, 474
TaqI TCGA 6 cut(s) 140, 231, 275, 549, 554, 647
TasI AATT 6 cut(s) 27, 105, 225, 271, 290, 429
TfiI GAWTC 3 cut(s) 142, 347, 551
Tru1I TTAA 4 cut(s) 30, 147, 162, 507
Tru9I TTAA 4 cut(s) 30, 147, 162, 507
TseI GCWGC 2 cut(s) 181, 184
TspDTI ATGAA 4 cut(s) 8, 17, 360, 483
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 290
XspI CTAG 2 cut(s) 452, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.