Rh1DG016400

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Forward (+)
2725146 .. 2727344
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG016400.1

Sequence Viewer

Length: 1119 bp
ATGCAAGCTGAGCATGATGAATATAGGAAAGCTAAGGAAAAACAGCTGACAGAAGTAGAGTGTTCGTTGGATACTGTAGAGAAGAGATTGTCAGTGACGCTAGAATATCGCGTAGAGATGGAGAAGAGATTAGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTACTCTCAAATCGAAGGAGTCTAGCCACGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGGTGGACAAAATGGACAGAAAACACGAAAAAGACGAGGTAGGGGCAGGATGTCAAGCAAGAACGAAGAGGTTTTGAAGCTTATAAATAACAAGGCTTATGATTATATCACATTATATCTATTGCACGAGAAACAGTGGTGGCCTGACAAATCTAAACTTATGGAACAAAAAAAAAAGAGCGTTGTAGCTGACTTGGGAAGACATTCTATCCAAACATCTGAATTCAAAAAGGAACTCGACGATCTGAATAAGGCCTTGAAGCTTGCGGGGAAGTCTGAAACCAACGTAAGACTTACCCTTGGACGTACTCAGACTCAGGTTACTGGCATTGGCACTCTACCTTGCATGTCGTTGGTCTATGTGTTGCTCTACATGGCATTTCTTGTTCTACTTGCTTTTCGGGTTATATCATATTTCAATGTCACAGATGGTACCTTCATTGACGCACTTTATATTACTTCTGTTACGCTATTCACTGTGGGTTTTGGGGATATTGCTCCTAAGTGGAGCGGTACTCTACTTTTCTGTGATATGTTGGGTATGTTTGGATGTATCATACCGTCTATCTACAACCATTTTGTGGGTCAGATGGCAGATTGGTTGTATCAGAGGTATCTTTCTGGTGTGCAGAGTCACTTTAGGAGACGCTCCTATATGATGCCTTCAGTTGCTGGCACGATTTTAGTGCTTATACTTTCACGGATGGCAGCCATTTATTATTTTGAGAGGGAGCGACTTTGTAGACAGTTTCATACTCATACCTCTGCACGGATCATTCTTGACATATTTCACCTGACTGTTATGACCATGACTACGATTGGATATGGAGATTTCGCATTTGCTACTGCACATGGGAGAGCATTCGCCGCATTATGGATTCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

372

Amino Acids

42.75

Weight (kDa)

9.24

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 204 - 274 1.7e-08 Ion channel
Ion_trans_2 PF07885 305 - 371 3.6e-07 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
Acc65I GGTACC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 662
AccB7I CCANNNNNTGG 1 cut(s) 811
AccBSI CCGCTC 1 cut(s) 741
AccI GTMKAC 1 cut(s) 973
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 497, 741, 1098
AclWI GGATC 1 cut(s) 1010
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 3 cut(s) 538, 664, 745
AfiI CCNNNNNNNGG 3 cut(s) 811, 999, 1104
AgsI TTSAA 4 cut(s) 307, 457, 490, 649
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 8 cut(s) 8, 32, 46, 215, 220, 310, 419, 493
AluI AGCT 8 cut(s) 8, 32, 46, 215, 220, 310, 419, 493
Alw26I GTCTC 2 cut(s) 202, 868
AlwI GGATC 1 cut(s) 1010
AlwNI CAGNNNCTG 1 cut(s) 902
AoxI GGCC 2 cut(s) 371, 483
ApeKI GCWGC 1 cut(s) 938
ApoI RAATTY 1 cut(s) 452
Asp700I GAANNNNTTC 1 cut(s) 433
Asp718I GGTACC 1 cut(s) 662
AsuHPI GGTGA 1 cut(s) 1013
BanI GGYRCC 1 cut(s) 662
BauI CACGAG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 950
BccI CCATC 4 cut(s) 112, 653, 814, 928
BcgI CGANNNNNNTGC 2 cut(s) 898, 932
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 64
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 202, 868
BfaI CTAG 2 cut(s) 101, 189
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 2 cut(s) 939, 1098
BlpI GCTNAGC 2 cut(s) 9, 216
BlsI GCNGC 2 cut(s) 940, 1099
Bme1390I CCNGG 1 cut(s) 231
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 879
BpiI GAAGAC 1 cut(s) 436
BplI GAGNNNNNCTC 2 cut(s) 730, 762
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 2 cut(s) 9, 216
BsaJI CCNNGG 1 cut(s) 529
Bsc4I CCNNNNNNNGG 3 cut(s) 811, 999, 1104
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 4 cut(s) 226, 285, 785, 939
BseLI CCNNNNNNNGG 3 cut(s) 811, 999, 1104
BseMII CTCAG 3 cut(s) 230, 554, 560
BseNI ACTGG 1 cut(s) 559
BseXI GCAGC 1 cut(s) 950
BsgI GTGCAG 3 cut(s) 878, 981, 1062
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 373, 485
BshNI GGYRCC 1 cut(s) 662
BslI CCNNNNNNNGG 3 cut(s) 811, 999, 1104
BsmAI GTCTC 2 cut(s) 202, 868
BsmBI CGTCTC 2 cut(s) 202, 868
BsmI GAATGC 1 cut(s) 1091
BsnI GGCC 2 cut(s) 373, 485
Bsp143I GATC 3 cut(s) 223, 472, 1002
Bsp1720I GCTNAGC 2 cut(s) 9, 216
BspACI CCGC 3 cut(s) 497, 741, 1098
BspANI GGCC 2 cut(s) 373, 485
BspCNI CTCAG 3 cut(s) 229, 553, 559
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 664
BspPI GGATC 1 cut(s) 1010
BspT107I GGYRCC 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 741
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 3 cut(s) 223, 472, 1002
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 529
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 6 cut(s) 76, 366, 709, 792, 978, 1030
Bst6I CTCTTC 3 cut(s) 77, 119, 291
BstC8I GCNNGC 3 cut(s) 6, 495, 904
BstDEI CTNAG 6 cut(s) 9, 33, 216, 540, 546, 732
BstF5I GGATG 4 cut(s) 226, 285, 785, 939
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 3 cut(s) 226, 475, 1005
BstMAI GTCTC 2 cut(s) 202, 868
BstMBI GATC 3 cut(s) 223, 472, 1002
BstMWI GCNNNNNNNGC 2 cut(s) 10, 1097
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 950
BstV2I GAAGAC 1 cut(s) 436
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 373, 485
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 4 cut(s) 226, 285, 785, 939
BtsIMutI CAGTG 3 cut(s) 99, 371, 705
Cac8I GCNNGC 3 cut(s) 6, 495, 904
CaiI CAGNNNCTG 1 cut(s) 902
CseI GACGC 3 cut(s) 106, 683, 885
Csp6I GTAC 3 cut(s) 537, 663, 744
CviAII CATG 5 cut(s) 14, 577, 604, 1039, 1082
CviQI GTAC 3 cut(s) 537, 663, 744
DdeI CTNAG 6 cut(s) 9, 33, 216, 540, 546, 732
DpnI GATC 3 cut(s) 225, 474, 1004
DpnII GATC 3 cut(s) 223, 472, 1002
Eam1104I CTCTTC 3 cut(s) 77, 119, 291
EarI CTCTTC 3 cut(s) 77, 119, 291
Eco130I CCWWGG 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 529
Esp3I CGTCTC 2 cut(s) 202, 868
FaeI CATG 5 cut(s) 17, 580, 607, 1042, 1085
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 5 cut(s) 13, 576, 603, 1038, 1081
FauI CCCGC 1 cut(s) 490
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 973
Fnu4HI GCNGC 2 cut(s) 939, 1098
FokI GGATG 4 cut(s) 213, 292, 792, 946
Fsp4HI GCNGC 2 cut(s) 939, 1098
FspBI CTAG 2 cut(s) 101, 189
GluI GCNGC 2 cut(s) 939, 1098
HaeIII GGCC 2 cut(s) 373, 485
HgaI GACGC 3 cut(s) 106, 683, 885
Hin1II CATG 5 cut(s) 17, 580, 607, 1042, 1085
HindIII AAGCTT 2 cut(s) 308, 491
HinfI GANTC 4 cut(s) 185, 544, 862, 1108
HphI GGTGA 1 cut(s) 1013
Hpy166II GTNNAC 2 cut(s) 236, 974
Hpy188I TCNGA 6 cut(s) 451, 477, 508, 543, 819, 840
Hpy188III TCNNGA 1 cut(s) 1010
Hpy8I GTNNAC 2 cut(s) 236, 974
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 175, 676, 903
HpyCH4III ACNGT 6 cut(s) 76, 366, 709, 792, 978, 1030
HpyCH4IV ACGT 3 cut(s) 195, 516, 535
HpyCH4V TGCA 6 cut(s) 4, 355, 576, 859, 998, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 1097
HpyF3I CTNAG 6 cut(s) 9, 33, 216, 540, 546, 732
HpySE526I ACGT 3 cut(s) 195, 516, 535
Hsp92II CATG 5 cut(s) 17, 580, 607, 1042, 1085
KpnI GGTACC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 223, 472, 1002
LmnI GCTCC 4 cut(s) 733, 738, 884, 961
LpnPI CCDG 9 cut(s) 216, 243, 262, 387, 533, 540, 837, 888, 1037
Lsp1109I GCAGC 1 cut(s) 950
LweI GCATC 1 cut(s) 879
MaeI CTAG 2 cut(s) 101, 189
MaeII ACGT 3 cut(s) 195, 516, 535
MaeIII GTNAC 5 cut(s) 94, 550, 652, 694, 863
MalI GATC 3 cut(s) 225, 474, 1004
MbiI CCGCTC 1 cut(s) 741
MboI GATC 3 cut(s) 223, 472, 1002
MboII GAAGA 4 cut(s) 94, 136, 308, 441
MluCI AATT 1 cut(s) 452
MlyI GAGTC 3 cut(s) 194, 538, 871
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 6 cut(s) 148, 260, 292, 834, 951, 1003
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 2 cut(s) 141, 1117
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 1091
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 10, 1097
NdeII GATC 3 cut(s) 223, 472, 1002
NlaIII CATG 5 cut(s) 17, 580, 607, 1042, 1085
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 3 cut(s) 94, 652, 863
NspI RCATGY 1 cut(s) 580
PceI AGGCCT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 1091
PdmI GAANNNNTTC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 1108
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 2 cut(s) 940, 1099
PleI GAGTC 3 cut(s) 193, 538, 870
PpsI GAGTC 3 cut(s) 193, 538, 870
PsiI TTATAA 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 664
PstNI CAGNNNCTG 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 3 cut(s) 538, 664, 745
RsaNI GTAC 3 cut(s) 537, 663, 744
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 141, 1117
SatI GCNGC 2 cut(s) 939, 1098
Sau3AI GATC 3 cut(s) 223, 472, 1002
SchI GAGTC 3 cut(s) 194, 538, 871
ScrFI CCNGG 1 cut(s) 231
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 1 cut(s) 452
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 3 cut(s) 497, 741, 1098
SspMI CTAG 2 cut(s) 101, 189
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 6 cut(s) 76, 366, 709, 792, 978, 1030
TaiI ACGT 3 cut(s) 198, 519, 538
TaqI TCGA 2 cut(s) 179, 468
TasI AATT 1 cut(s) 452
TauI GCSGC 1 cut(s) 1100
TfiI GAWTC 1 cut(s) 1108
Tru1I TTAA 2 cut(s) 141, 1117
Tru9I TTAA 2 cut(s) 141, 1117
TscAI CASTG 3 cut(s) 99, 371, 712
TseFI GTSAC 3 cut(s) 94, 652, 863
TseI GCWGC 1 cut(s) 938
Tsp45I GTSAC 3 cut(s) 94, 652, 863
TspDTI ATGAA 3 cut(s) 33, 658, 971
TspGWI ACGGA 2 cut(s) 946, 1015
TspRI CASTG 3 cut(s) 99, 371, 712
Van91I CCANNNNNTGG 1 cut(s) 811
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 973
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 2 cut(s) 101, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.