Rmu_sc0007472.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007472.1
OG0000499
Physical Location & Seq
Forward (+)
11932 .. 12213
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007472.1_g000004.1.cds

Sequence Viewer

Length: 282 bp
atgtttcccgttgcagaggaggctgacgaagagggatggctggagtttcgggttgacggtggacagttaattagggagggggctagacttgagcagcatgaaattgaagttgtggaggaagcgagagaagaacagattcagactgatgagattgagccgctgcagttgaggaatgcgcaattggcagaggaacttgcaacgaccaaagcagacctggcatatgccgaagaaaaactgggtgtggattccacagcggttccggctggacctcgttctcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

4.15

Isoelectric Point (pI)

73.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
AciI CCGC 2 cut(s) 158, 254
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
ApeKI GCWGC 2 cut(s) 94, 160
Asp700I GAANNNNTTC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 106, 147
BccI CCATC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 215
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 161
BisI GCNGC 3 cut(s) 95, 158, 161
BlsI GCNGC 3 cut(s) 96, 159, 162
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 106, 147
BsiSI CCGG 1 cut(s) 260
BsmI GAATGC 1 cut(s) 178
BspACI CCGC 2 cut(s) 158, 254
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 59, 66
Bst6I CTCTTC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 178
BstMWI GCNNNNNNNGC 4 cut(s) 20, 182, 215, 260
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 106, 147
BtsCI GGATG 1 cut(s) 41
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 266
CviAII CATG 1 cut(s) 98
CviJI RGCY 5 cut(s) 23, 40, 83, 157, 263
CviKI_1 RGCY 5 cut(s) 23, 40, 83, 157, 263
DdeI CTNAG 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 220, 222
FatI CATG 1 cut(s) 97
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 95, 158, 161
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 3 cut(s) 95, 158, 161
FspBI CTAG 1 cut(s) 84
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
GluI GCNGC 3 cut(s) 95, 158, 161
GsuI CTGGAG 1 cut(s) 62
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 2 cut(s) 136, 245
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 55, 62
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 2 cut(s) 55, 62
HpyCH4III ACNGT 2 cut(s) 59, 66
HpyCH4V TGCA 3 cut(s) 14, 163, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 182, 215, 260
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 176
LpnPI CCDG 6 cut(s) 26, 200, 221, 227, 249, 273
Lsp1109I GCAGC 2 cut(s) 106, 147
MaeI CTAG 1 cut(s) 84
MboII GAAGA 3 cut(s) 41, 140, 239
MfeI CAATTG 1 cut(s) 179
MluCI AATT 3 cut(s) 69, 102, 179
MnlI CCTC 8 cut(s) 10, 13, 25, 70, 109, 162, 181, 279
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 160, 254
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 4 cut(s) 20, 182, 215, 260
NdeI CATATG 1 cut(s) 220
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 258
NsbI TGCGCA 1 cut(s) 177
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 136, 245
PkrI GCNGC 3 cut(s) 96, 159, 162
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 95, 158, 161
Sau96I GGNCC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 215
SetI ASST 2 cut(s) 216, 271
SfcI CTRYAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 3 cut(s) 69, 102, 179
SsiI CCGC 2 cut(s) 158, 254
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 59, 66
TasI AATT 3 cut(s) 69, 102, 179
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 2 cut(s) 136, 245
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 2 cut(s) 94, 160
TspDTI ATGAA 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.