Rh1BG021500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000499
Physical Location & Seq
Reverse (-)
2807581 .. 2814970
7390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG021500.1

Sequence Viewer

Length: 459 bp
ATGTTTCCCGTTGCAGAGGAGGCTGACGAAGAGGGATGGCTGGAGTTCCGGGTTGACGGTGGGCAGTTGATTAGGGAGCGGGCTAGACTTGAGCAGCATGAAATTGAAGTTGAGGAGGAAGCGAGAGAGGAAGAGATTGAGCCGCTGCAGTTGAGGAATGTGCAATTGGTAGAGGAACTTGCAACGATCAAAGCAAAGCTGGCAAATGCCGAAGAAAAACTGGGTGTGGATTCCACAGCGGTTCCGGCTGGACCTCGTTCTCAGTGGGAGAGTATTCGCCACATTGTGGATTCCTTTCTCTACTACCTTTTATTCAGTCGCGATCACCTTCCTGGCTCAGGCTATTTTGAGTGCTGTGTCACGTCGATCTTTAGGAGGACACATCGGTGCATGGATGAGCTAGAGCTGGGGATGGAGGACCAGGATTCGTCATTCCTAGATATATTTTCCATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.62

Weight (kDa)

4.45

Isoelectric Point (pI)

71.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AccBSI CCGCTC 1 cut(s) 79
AccII CGCG 1 cut(s) 321
AciI CCGC 3 cut(s) 79, 143, 239
AdeI CACNNNGTG 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 286, 338
AgsI TTSAA 1 cut(s) 107
AjiI CACGTC 1 cut(s) 363
AjnI CCWGG 2 cut(s) 331, 420
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 3 cut(s) 199, 400, 406
AluI AGCT 3 cut(s) 199, 400, 406
ApeKI GCWGC 2 cut(s) 94, 145
AspS9I GGNCC 2 cut(s) 251, 418
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 2 cut(s) 251, 418
BbvI GCAGC 2 cut(s) 106, 132
BccI CCATC 2 cut(s) 30, 406
BciT130I CCWGG 2 cut(s) 333, 422
BcnI CCSGG 1 cut(s) 50
BfaI CTAG 3 cut(s) 84, 401, 437
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 3 cut(s) 95, 143, 146
BlsI GCNGC 3 cut(s) 96, 144, 147
Bme1390I CCNGG 3 cut(s) 50, 333, 422
Bme18I GGWCC 2 cut(s) 251, 418
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 251, 418
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 3 cut(s) 50, 333, 422
BmrI ACTGGG 1 cut(s) 230
BmuI ACTGGG 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 338
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 333, 422
BseGI GGATG 3 cut(s) 41, 400, 417
BseLI CCNNNNNNNGG 2 cut(s) 286, 338
BseMII CTCAG 2 cut(s) 275, 351
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 32, 128
BseXI GCAGC 2 cut(s) 106, 132
BseYI CCCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 49, 245
BslI CCNNNNNNNGG 2 cut(s) 286, 338
Bsp143I GATC 3 cut(s) 186, 322, 366
Bsp68I TCGCGA 1 cut(s) 321
BspACI CCGC 3 cut(s) 79, 143, 239
BspCNI CTCAG 2 cut(s) 274, 350
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 225
BssMI GATC 3 cut(s) 186, 322, 366
Bst2UI CCWGG 2 cut(s) 333, 422
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 24, 126
BstC8I GCNNGC 2 cut(s) 81, 201
BstDEI CTNAG 2 cut(s) 261, 337
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 41, 400, 417
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 3 cut(s) 189, 325, 369
BstMBI GATC 3 cut(s) 186, 322, 366
BstMWI GCNNNNNNNGC 3 cut(s) 20, 200, 245
BstNI CCWGG 2 cut(s) 333, 422
BstSCI CCNGG 3 cut(s) 48, 331, 420
BstSFI CTRYAG 1 cut(s) 146
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 106, 132
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 3 cut(s) 41, 400, 417
BtsIMutI CAGTG 1 cut(s) 269
BtuMI TCGCGA 1 cut(s) 321
Cac8I GCNNGC 2 cut(s) 81, 201
Cfr13I GGNCC 2 cut(s) 251, 418
CviAII CATG 2 cut(s) 98, 391
DdeI CTNAG 2 cut(s) 261, 337
DpnI GATC 3 cut(s) 188, 324, 368
DpnII GATC 3 cut(s) 186, 322, 366
DraIII CACNNNGTG 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 24, 126
EarI CTCTTC 2 cut(s) 24, 126
Eco47I GGWCC 2 cut(s) 251, 418
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 331, 420
FaeI CATG 2 cut(s) 101, 394
FaiI YATR 4 cut(s) 99, 392, 443, 452
FatI CATG 2 cut(s) 97, 390
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 95, 143, 146
FokI GGATG 3 cut(s) 48, 407, 424
Fsp4HI GCNGC 3 cut(s) 95, 143, 146
FspBI CTAG 3 cut(s) 84, 401, 437
GluI GCNGC 3 cut(s) 95, 143, 146
GsaI CCCAGC 1 cut(s) 410
GsuI CTGGAG 1 cut(s) 62
HapII CCGG 2 cut(s) 49, 245
Hin1II CATG 2 cut(s) 101, 394
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 3 cut(s) 230, 290, 425
HpaII CCGG 2 cut(s) 49, 245
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 5 cut(s) 14, 148, 163, 182, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 200, 245
HpyF3I CTNAG 2 cut(s) 261, 337
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 2 cut(s) 101, 394
Kzo9I GATC 3 cut(s) 186, 322, 366
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 2 cut(s) 106, 132
MaeI CTAG 3 cut(s) 84, 401, 437
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 358
MalI GATC 3 cut(s) 188, 324, 368
MbiI CCGCTC 1 cut(s) 79
MboI GATC 3 cut(s) 186, 322, 366
MboII GAAGA 3 cut(s) 41, 143, 224
MfeI CAATTG 1 cut(s) 164
MluCI AATT 2 cut(s) 102, 164
MslI CAYNNNNRTG 1 cut(s) 385
MspA1I CMGCKG 2 cut(s) 145, 239
MspI CCGG 2 cut(s) 49, 245
MspR9I CCNGG 3 cut(s) 50, 333, 422
MunI CAATTG 1 cut(s) 164
MvaI CCWGG 2 cut(s) 333, 422
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 20, 200, 245
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 186, 322, 366
NlaIII CATG 2 cut(s) 101, 394
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 358
NruI TCGCGA 1 cut(s) 321
OliI CACNNNNGTG 1 cut(s) 385
PfeI GAWTC 3 cut(s) 230, 290, 425
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 3 cut(s) 96, 144, 147
Psp6I CCWGG 2 cut(s) 331, 420
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 2 cut(s) 331, 420
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 251, 418
PstI CTGCAG 1 cut(s) 150
RruI TCGCGA 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 385
SatI GCNGC 3 cut(s) 95, 143, 146
Sau3AI GATC 3 cut(s) 186, 322, 366
Sau96I GGNCC 2 cut(s) 251, 418
ScrFI CCNGG 3 cut(s) 50, 333, 422
SetI ASST 7 cut(s) 201, 256, 309, 330, 365, 402, 408
SfcI CTRYAG 1 cut(s) 146
SinI GGWCC 2 cut(s) 251, 418
SmiMI CAYNNNNRTG 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 102, 164
SsiI CCGC 3 cut(s) 79, 143, 239
SspMI CTAG 3 cut(s) 84, 401, 437
StyD4I CCNGG 3 cut(s) 48, 331, 420
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 365
TasI AATT 2 cut(s) 102, 164
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 3 cut(s) 230, 290, 425
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 94, 145
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 251, 418
XagI CCTNNNNNAGG 1 cut(s) 336
XspI CTAG 3 cut(s) 84, 401, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.