Rh1DG017400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000499
Physical Location & Seq
Reverse (-)
2846195 .. 2854901
8707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG017400.1

Sequence Viewer

Length: 279 bp
ATGGACTTGGGACAACGAGGTATTCGTCGTGTATATCCATTGAAACGGCGCCGTAGTAGCAGTTTCTTGTTCAATTTAGGTTTTTCAGTGAAACCAAAAGGAACCCCCAAACTCATCACAGTAGCACAAAGCAAAACTTCCGATTTCAGTCTCTCTTATCAGCTTCTAATAAGTAGGAGCAGGATGTCAAGCAAGAACGAAGAGGTTTCGAAGCTTAAAAACAAGGTAAAAGAGATATTTCATAGGAGGCAAGTTCAATATGATGAATATAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.84

Weight (kDa)

10.73

Isoelectric Point (pI)

69.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 49
AgsI TTSAA 3 cut(s) 43, 73, 257
AluBI AGCT 2 cut(s) 163, 214
AluI AGCT 2 cut(s) 163, 214
Alw26I GTCTC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 48
BceAI ACGGC 2 cut(s) 36, 62
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 50, 103
Bpu14I TTCGAA 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 49
BseGI GGATG 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 50, 103
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 209
BstF5I GGATG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 51
CviJI RGCY 2 cut(s) 163, 214
CviKI_1 RGCY 2 cut(s) 163, 214
DinI GGCGCC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
FaiI YATR 4 cut(s) 34, 243, 261, 270
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FaqI GGGAC 1 cut(s) 24
FokI GGATG 1 cut(s) 196
GlaI GCGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 52
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 49
HspAI GCGC 1 cut(s) 49
KasI GGCGCC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 1 cut(s) 166
MboII GAAGA 1 cut(s) 212
MluCI AATT 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 49
MnlI CCTC 3 cut(s) 11, 196, 240
MseI TTAA 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 57
NarI GGCGCC 1 cut(s) 49
NlaIV GGNNCC 2 cut(s) 50, 103
NspV TTCGAA 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PluTI GGCGCC 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 50, 103
SaqAI TTAA 1 cut(s) 216
SetI ASST 6 cut(s) 22, 82, 165, 207, 216, 228
SfoI GGCGCC 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 209
SgeI CNNG 9 cut(s) 19, 29, 41, 79, 193, 201, 205, 235, 263
Sse9I AATT 1 cut(s) 73
SspDI GGCGCC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 209
TasI AATT 1 cut(s) 73
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 230, 279
TspRI CASTG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.