Rmu_sc0005939.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005939.1
OG0000499
Physical Location & Seq
Forward (+)
1 .. 2825
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005939.1_g000001.1.cds

Sequence Viewer

Length: 757 bp
tagcccaattatatctgttagctttacttgggactgctcacgacggacacttgggactgctccctccctccctccctctgaggctctgacaaccacccatccatccgaaacactcctcactgcggccaccacctctaacccgacccggtcccgaatcccagtaatcttggtccggattcagctgatagacgccaagaactgggcaagtcccatccgggtgtgcgaccgacaacgaggtaggggcaggatgtcaagcaggaacgaagaagttttgaagcttaaaaacaagattattgaatgccaagaggaaacgctgcggctattgcaggagaaacaggggtggcctgccaaatctaatcttatggaacagacaaaagaaagagctgtagctgacttgacaagacaatcgaccgaaacatctgaatttgagaaggaactcatcgatctgtacaaggccttgaagcgtgaggagaagtctgaaaccaatctaaaagatatttttgacgagacgcaagcttcgcatgaggaacataggaaagctatggaaaagcagctgacagaagtagagtgtacgttggatactgtagataagagattgtcagtgatgctagaaaatcgcgtagagatggagaagagactaggaaatcttaatgttttctatgaggctgtgtattctactctcaaatcgaagaagtctaatggtgtctctcttgttaaagaagctcaggtgatatattgtggcaatatcatttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.64

Weight (kDa)

8.15

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 1 cut(s) 619
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 2 cut(s) 123, 317
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 2 cut(s) 450, 572
AfiI CCNNNNNNNGG 2 cut(s) 122, 199
AgsI TTSAA 3 cut(s) 275, 297, 461
AluBI AGCT 9 cut(s) 22, 182, 278, 384, 390, 516, 540, 554, 723
AluI AGCT 9 cut(s) 22, 182, 278, 384, 390, 516, 540, 554, 723
Alw26I GTCTC 3 cut(s) 501, 629, 710
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 3 cut(s) 124, 342, 454
ApeKI GCWGC 2 cut(s) 314, 551
ApoI RAATTY 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AspS9I GGNCC 2 cut(s) 148, 170
AsuC2I CCSGG 2 cut(s) 146, 216
AsuHPI GGTGA 1 cut(s) 740
AvaII GGWCC 2 cut(s) 148, 170
BbvI GCAGC 2 cut(s) 301, 563
BccI CCATC 4 cut(s) 106, 110, 219, 620
BciVI GTATCC 1 cut(s) 572
BcnI CCSGG 2 cut(s) 146, 216
BcoDI GTCTC 3 cut(s) 501, 629, 710
BfaI CTAG 2 cut(s) 609, 639
BfmI CTRYAG 2 cut(s) 385, 583
BfuI GTATCC 1 cut(s) 572
BisI GCNGC 4 cut(s) 124, 315, 318, 552
BlsI GCNGC 4 cut(s) 125, 316, 319, 553
Bme1390I CCNGG 2 cut(s) 146, 216
Bme18I GGWCC 2 cut(s) 148, 170
BmgT120I GGNCC 2 cut(s) 148, 170
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 146, 216
BmrI ACTGGG 2 cut(s) 153, 209
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 2 cut(s) 153, 209
Bpu10I CCTNAGC 1 cut(s) 724
BpuMI CCSGG 2 cut(s) 146, 216
Bsa29I ATCGAT 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 199
Bse1I ACTGG 2 cut(s) 159, 204
BseAI TCCGGA 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 442
BseGI GGATG 4 cut(s) 98, 102, 211, 253
BseLI CCNNNNNNNGG 2 cut(s) 122, 199
BseMII CTCAG 2 cut(s) 70, 738
BseNI ACTGG 2 cut(s) 159, 204
BseRI GAGGAG 2 cut(s) 105, 483
BseXI GCAGC 2 cut(s) 301, 563
Bsh1236I CGCG 1 cut(s) 619
Bsh1285I CGRYCG 2 cut(s) 227, 412
BshFI GGCC 3 cut(s) 126, 344, 456
BshVI ATCGAT 1 cut(s) 442
BsiEI CGRYCG 2 cut(s) 227, 412
BsiSI CCGG 3 cut(s) 146, 173, 215
BslFI GGGAC 4 cut(s) 45, 68, 134, 193
BslI CCNNNNNNNGG 2 cut(s) 122, 199
BsmAI GTCTC 3 cut(s) 501, 629, 710
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 4 cut(s) 45, 68, 134, 193
BsmI GAATGC 1 cut(s) 303
BsnI GGCC 3 cut(s) 126, 344, 456
Bsp13I TCCGGA 1 cut(s) 172
Bsp1407I TGTACA 1 cut(s) 448
Bsp143I GATC 1 cut(s) 443
BspACI CCGC 2 cut(s) 123, 317
BspANI GGCC 3 cut(s) 126, 344, 456
BspCNI CTCAG 2 cut(s) 71, 737
BspDI ATCGAT 1 cut(s) 442
BspEI TCCGGA 1 cut(s) 172
BspFNI CGCG 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 448
BsrI ACTGG 2 cut(s) 159, 204
BssMI GATC 1 cut(s) 443
BssNI GRCGYC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 584
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 346, 514
BstDEI CTNAG 2 cut(s) 79, 724
BstF5I GGATG 4 cut(s) 98, 102, 211, 253
BstFNI CGCG 1 cut(s) 619
BstKTI GATC 1 cut(s) 446
BstMAI GTCTC 3 cut(s) 501, 629, 710
BstMBI GATC 1 cut(s) 443
BstMCI CGRYCG 2 cut(s) 227, 412
BstMWI GCNNNNNNNGC 2 cut(s) 323, 518
BstSCI CCNGG 2 cut(s) 144, 214
BstSFI CTRYAG 2 cut(s) 385, 583
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 2 cut(s) 301, 563
Bsu15I ATCGAT 1 cut(s) 442
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 3 cut(s) 126, 344, 456
BsuTUI ATCGAT 1 cut(s) 442
BtsCI GGATG 4 cut(s) 98, 102, 211, 253
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 607
Cac8I GCNNGC 2 cut(s) 346, 514
Cfr13I GGNCC 2 cut(s) 148, 170
ClaI ATCGAT 1 cut(s) 442
CseI GACGC 2 cut(s) 198, 518
Csp6I GTAC 2 cut(s) 449, 571
CviAII CATG 1 cut(s) 522
CviQI GTAC 2 cut(s) 449, 571
DdeI CTNAG 2 cut(s) 79, 724
DpnI GATC 1 cut(s) 445
DpnII GATC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 148, 170
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 1 cut(s) 525
FaiI YATR 7 cut(s) 12, 363, 523, 532, 543, 661, 734
FaqI GGGAC 4 cut(s) 45, 68, 134, 193
FatI CATG 1 cut(s) 521
Fnu4HI GCNGC 4 cut(s) 124, 315, 318, 552
FokI GGATG 4 cut(s) 85, 89, 198, 260
Fsp4HI GCNGC 4 cut(s) 124, 315, 318, 552
FspBI CTAG 2 cut(s) 609, 639
GluI GCNGC 4 cut(s) 124, 315, 318, 552
HaeIII GGCC 3 cut(s) 126, 344, 456
HapII CCGG 3 cut(s) 146, 173, 215
HgaI GACGC 2 cut(s) 198, 518
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 1 cut(s) 525
HindIII AAGCTT 2 cut(s) 276, 514
HinfI GANTC 2 cut(s) 154, 176
HpaII CCGG 3 cut(s) 146, 173, 215
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 5 cut(s) 80, 88, 107, 422, 479
Hpy188III TCNNGA 3 cut(s) 40, 151, 173
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 518
HpyF3I CTNAG 2 cut(s) 79, 724
HpySE526I ACGT 1 cut(s) 573
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 1 cut(s) 525
Kpn2I TCCGGA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 2 cut(s) 301, 563
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 609, 639
MaeII ACGT 1 cut(s) 573
MalI GATC 1 cut(s) 445
MboI GATC 1 cut(s) 443
MboII GAAGA 3 cut(s) 276, 644, 701
MluCI AATT 2 cut(s) 7, 423
MmeI TCCRAC 1 cut(s) 556
MroI TCCGGA 1 cut(s) 172
MseI TTAA 4 cut(s) 280, 649, 715, 755
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 182, 554
MspI CCGG 3 cut(s) 146, 173, 215
MspR9I CCNGG 2 cut(s) 146, 216
Mva1269I GAATGC 1 cut(s) 303
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 323, 518
NciI CCSGG 2 cut(s) 146, 216
NdeII GATC 1 cut(s) 443
NlaIII CATG 1 cut(s) 525
NlaIV GGNNCC 1 cut(s) 150
PceI AGGCCT 1 cut(s) 456
PctI GAATGC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 154, 176
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 125, 316, 319, 553
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 148, 170
PsyI GACNNNGTC 1 cut(s) 146
PvuII CAGCTG 2 cut(s) 182, 554
RsaI GTAC 2 cut(s) 450, 572
RsaNI GTAC 2 cut(s) 449, 571
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 4 cut(s) 280, 649, 715, 755
SatI GCNGC 4 cut(s) 124, 315, 318, 552
Sau3AI GATC 1 cut(s) 443
Sau96I GGNCC 2 cut(s) 148, 170
ScrFI CCNGG 2 cut(s) 146, 216
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 2 cut(s) 385, 583
SinI GGWCC 2 cut(s) 148, 170
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 2 cut(s) 7, 423
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 2 cut(s) 123, 317
SspMI CTAG 2 cut(s) 609, 639
StuI AGGCCT 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 144, 214
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 576
TaqI TCGA 3 cut(s) 408, 442, 687
TaqII GACCGA 2 cut(s) 241, 426
TasI AATT 2 cut(s) 7, 423
TatI WGTACW 1 cut(s) 448
TauI GCSGC 2 cut(s) 126, 320
TfiI GAWTC 2 cut(s) 154, 176
Tru1I TTAA 4 cut(s) 280, 649, 715, 755
Tru9I TTAA 4 cut(s) 280, 649, 715, 755
TscAI CASTG 2 cut(s) 125, 607
TseI GCWGC 2 cut(s) 314, 551
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 125, 607
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 148, 170
XapI RAATTY 1 cut(s) 423
XspI CTAG 2 cut(s) 609, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.