Rroxscaffold_4G00330800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000499
Physical Location & Seq
Forward (+)
64569691 .. 64571434
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330800.1

Sequence Viewer

Length: 561 bp
ATGTCAAGCAGGAACGAAGAAGTTTTGAAGCTTAAAAACAAGGTTGAAAACAAGATTATTGAATGCCAAGAGGAAACGCTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTATGGAACAGACAAAAGAAAGAGCTGTAGCTGACTTGACTAGACAATCGACCGAAACATCTGAATTTGAGAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTGAGGAGAAGTCTGAAACCAGTCTAAAAGATATTTTTGACGAGACGCAAGCTTCGCATGAGGAACATAGGAAAGCTATGGAAAAAGAGCTGACAGAAGTAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGTGATGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAATGGTGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGATGGACAGAATGGACCCAAAATGCGAAAAAGGAGAGGGTCGAAGAAGTCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.67

Weight (kDa)

6.39

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 384
AciI CCGC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 2 cut(s) 215, 337
AgsI TTSAA 4 cut(s) 28, 47, 62, 226
AluBI AGCT 8 cut(s) 31, 149, 155, 281, 305, 319, 488, 493
AluI AGCT 8 cut(s) 31, 149, 155, 281, 305, 319, 488, 493
Alw26I GTCTC 3 cut(s) 266, 394, 475
AoxI GGCC 2 cut(s) 107, 219
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
AspS9I GGNCC 1 cut(s) 518
AvaII GGWCC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 385, 500
BciVI GTATCC 1 cut(s) 337
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 3 cut(s) 266, 394, 475
BfaI CTAG 3 cut(s) 165, 374, 404
BfmI CTRYAG 2 cut(s) 150, 348
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 2 cut(s) 80, 83
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 2 cut(s) 81, 84
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 520
BmsI GCATC 1 cut(s) 360
Bpu1102I GCTNAGC 1 cut(s) 489
Bsa29I ATCGAT 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 207
BseGI GGATG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 384
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 109, 221
BshVI ATCGAT 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 177
BsmAI GTCTC 3 cut(s) 266, 394, 475
BsmBI CGTCTC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 109, 221
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 2 cut(s) 208, 496
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 1 cut(s) 82
BspANI GGCC 2 cut(s) 109, 221
BspCNI CTCAG 1 cut(s) 502
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 520
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 1 cut(s) 249
BssMI GATC 2 cut(s) 208, 496
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 111, 279
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 499
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 2 cut(s) 211, 499
BstMAI GTCTC 3 cut(s) 266, 394, 475
BstMBI GATC 2 cut(s) 208, 496
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 88, 283
BstSFI CTRYAG 2 cut(s) 150, 348
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 2 cut(s) 109, 221
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 111, 279
Cfr13I GGNCC 1 cut(s) 518
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 214, 336
CviAII CATG 1 cut(s) 287
CviQI GTAC 2 cut(s) 214, 336
DdeI CTNAG 1 cut(s) 489
DpnI GATC 2 cut(s) 210, 498
DpnII GATC 2 cut(s) 208, 496
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 518
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 1 cut(s) 290
FaiI YATR 6 cut(s) 128, 288, 297, 308, 426, 559
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 2 cut(s) 80, 83
FokI GGATG 1 cut(s) 486
Fsp4HI GCNGC 2 cut(s) 80, 83
FspBI CTAG 3 cut(s) 165, 374, 404
GluI GCNGC 2 cut(s) 80, 83
HaeIII GGCC 2 cut(s) 109, 221
HgaI GACGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 290
HindIII AAGCTT 2 cut(s) 29, 279
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 187, 244
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 283
HpyF3I CTNAG 1 cut(s) 489
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 208, 496
LpnPI CCDG 5 cut(s) 77, 86, 123, 262, 516
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 360
MaeI CTAG 3 cut(s) 165, 374, 404
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 210, 498
MboI GATC 2 cut(s) 208, 496
MboII GAAGA 4 cut(s) 29, 409, 466, 559
MluCI AATT 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 5 cut(s) 64, 226, 283, 421, 533
MseI TTAA 2 cut(s) 33, 414
MslI CAYNNNNRTG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 68
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 88, 283
NdeII GATC 2 cut(s) 208, 496
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 520
PceI AGGCCT 1 cut(s) 221
PctI GAATGC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 81, 84
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 1 cut(s) 518
RsaI GTAC 2 cut(s) 215, 337
RsaNI GTAC 2 cut(s) 214, 336
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 2 cut(s) 33, 414
SatI GCNGC 2 cut(s) 80, 83
Sau3AI GATC 2 cut(s) 208, 496
Sau96I GGNCC 1 cut(s) 518
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 2 cut(s) 150, 348
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 1 cut(s) 188
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 1 cut(s) 82
SspMI CTAG 3 cut(s) 165, 374, 404
StuI AGGCCT 1 cut(s) 221
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 341
TaqI TCGA 4 cut(s) 173, 207, 452, 545
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 33, 414
Tru9I TTAA 2 cut(s) 33, 414
TscAI CASTG 1 cut(s) 372
TseI GCWGC 1 cut(s) 79
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 1 cut(s) 188
XspI CTAG 3 cut(s) 165, 374, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.