Rh1AG024300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000499
Physical Location & Seq
Reverse (-)
4338864 .. 4512549
173686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG024300.1

Sequence Viewer

Length: 1251 bp
ATGTGGAGGATTCCCCAATTATATCTGTTAGCTTTACTTGCTCCCGACGGACACTTGGGACTCCTCTCCCCCCCTGACGACCACCCATCCATCCGAAACACTCCCTCACCGCGGCCACCACCTCCTAACCCGACCCGGTCCCAAATCCCAGTGATCTTAGTCCGGATTCAGCTGATAGACGCCAAGAACTGGGCTTCAATTCCCATCCGGGTGTGCGACCGACAACGAGGTAGGGGCAGGATGTCAAGCAGGAACGAAGAAGTTTTGAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAACGCTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTATGGAACAGACAAAAGAAAGAGCTGTAGCTGACTTGACAAGACAATCGACCGAAACATCTGAATTTGAGAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTAAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACGAGACGCAAGCTTCGCATGAGGAACATAGGAAAGCTATGGAAAAAAAGGTGATAGAAGTAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGCGATGCTTGAAAATCGCGTAGAGATGGGGAAGAGACTAGAAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAACAGTGTCTCTCTTGTCAAAGAAGCTCAGATTATTGAATGCCAAGAGGAAACGTTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTATGGAACAGACAAAAGAAAGAGCTGTAGCTGACTTGACAAGACAATCGACCGAAACATCTGAATTTGACAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTAAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACGCGATGCAAGCTTCGCATGAGAAATATAGGAAAGCTATGGAAAAGGAGCTGATAGAAGGAGAGTGTACGTTGGATACTGTAGATAAGAGATTGTCAGTGATGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTATGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAACGGTGTCTCTCTTGTCAAAGAAGCTCAGCTTGATCATCCTGGTGGACAGAATGGACGCAAAATGCGAAAAAGGAGAGGGTCGAAGAAGTCTCAATTGGAACCTTTGCTTAACATAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

48.15

Weight (kDa)

9.05

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AccII CGCG 4 cut(s) 112, 612, 938, 1050
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 4 cut(s) 110, 112, 310, 748
AclI AACGTT 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 416, 854
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 4 cut(s) 443, 565, 881, 1003
AfiI CCNNNNNNNGG 2 cut(s) 111, 189
AgsI TTSAA 7 cut(s) 198, 268, 290, 454, 605, 728, 892
AjnI CCWGG 1 cut(s) 1168
AjuI GAANNNNNNNTTGG 2 cut(s) 1208, 1240
Alw26I GTCTC 6 cut(s) 494, 622, 703, 1060, 1141, 1224
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 5 cut(s) 113, 335, 447, 773, 885
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 2 cut(s) 416, 854
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 2 cut(s) 136, 209
AsuHPI GGTGA 2 cut(s) 99, 559
AvaII GGWCC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 294
BccI CCATC 5 cut(s) 94, 98, 212, 613, 1051
BciT130I CCWGG 1 cut(s) 1170
BciVI GTATCC 2 cut(s) 565, 1003
BclI TGATCA 1 cut(s) 1162
BcnI CCSGG 2 cut(s) 136, 209
BcoDI GTCTC 6 cut(s) 494, 622, 703, 1060, 1141, 1224
BfaI CTAG 3 cut(s) 632, 1040, 1070
BfmI CTRYAG 4 cut(s) 378, 576, 816, 1014
BfuI GTATCC 2 cut(s) 565, 1003
BisI GCNGC 4 cut(s) 113, 308, 311, 749
BlpI GCTNAGC 1 cut(s) 1155
BlsI GCNGC 4 cut(s) 114, 309, 312, 750
Bme1390I CCNGG 3 cut(s) 136, 209, 1170
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 140, 1230
BmrFI CCNGG 3 cut(s) 136, 209, 1170
BmrI ACTGGG 2 cut(s) 143, 199
BmsI GCATC 3 cut(s) 588, 930, 1026
BmuI ACTGGG 2 cut(s) 143, 199
Bpu1102I GCTNAGC 1 cut(s) 1155
BpuMI CCSGG 2 cut(s) 136, 209
Bsa29I ATCGAT 2 cut(s) 435, 873
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 189
Bse1I ACTGG 2 cut(s) 149, 194
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 1 cut(s) 1170
BseCI ATCGAT 2 cut(s) 435, 873
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 5 cut(s) 86, 90, 204, 246, 1165
BseLI CCNNNNNNNGG 2 cut(s) 111, 189
BseMII CTCAG 2 cut(s) 731, 1169
BseNI ACTGG 2 cut(s) 149, 194
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 4 cut(s) 112, 612, 938, 1050
Bsh1285I CGRYCG 3 cut(s) 220, 405, 843
BshFI GGCC 5 cut(s) 115, 337, 449, 775, 887
BshVI ATCGAT 2 cut(s) 435, 873
BsiEI CGRYCG 3 cut(s) 220, 405, 843
BsiSI CCGG 3 cut(s) 136, 163, 208
BslFI GGGAC 2 cut(s) 72, 124
BslI CCNNNNNNNGG 2 cut(s) 111, 189
BsmAI GTCTC 6 cut(s) 494, 622, 703, 1060, 1141, 1224
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 72, 124
BsmI GAATGC 2 cut(s) 296, 734
BsnI GGCC 5 cut(s) 115, 337, 449, 775, 887
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 2 cut(s) 441, 879
Bsp143I GATC 4 cut(s) 153, 436, 874, 1162
Bsp1720I GCTNAGC 1 cut(s) 1155
BspACI CCGC 4 cut(s) 110, 112, 310, 748
BspANI GGCC 5 cut(s) 115, 337, 449, 775, 887
BspCNI CTCAG 2 cut(s) 730, 1168
BspDI ATCGAT 2 cut(s) 435, 873
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 4 cut(s) 112, 612, 938, 1050
BspLI GGNNCC 2 cut(s) 140, 1230
BsrGI TGTACA 2 cut(s) 441, 879
BsrI ACTGG 2 cut(s) 149, 194
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 4 cut(s) 153, 436, 874, 1162
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 1170
Bst4CI ACNGT 4 cut(s) 577, 695, 1015, 1133
Bst6I CTCTTC 2 cut(s) 620, 1058
BstACI GRCGYC 1 cut(s) 180
BstAUI TGTACA 2 cut(s) 441, 879
BstC8I GCNNGC 4 cut(s) 339, 507, 777, 945
BstDEI CTNAG 3 cut(s) 157, 717, 1155
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 5 cut(s) 86, 90, 204, 246, 1165
BstFNI CGCG 4 cut(s) 112, 612, 938, 1050
BstKTI GATC 4 cut(s) 156, 439, 877, 1165
BstMAI GTCTC 6 cut(s) 494, 622, 703, 1060, 1141, 1224
BstMBI GATC 4 cut(s) 153, 436, 874, 1162
BstMCI CGRYCG 3 cut(s) 220, 405, 843
BstMWI GCNNNNNNNGC 6 cut(s) 38, 316, 511, 754, 944, 949
BstNI CCWGG 1 cut(s) 1170
BstSCI CCNGG 3 cut(s) 134, 207, 1168
BstSFI CTRYAG 4 cut(s) 378, 576, 816, 1014
BstUI CGCG 4 cut(s) 112, 612, 938, 1050
BstV1I GCAGC 1 cut(s) 294
Bsu15I ATCGAT 2 cut(s) 435, 873
BsuI GTATCC 2 cut(s) 565, 1003
BsuRI GGCC 5 cut(s) 115, 337, 449, 775, 887
BsuTUI ATCGAT 2 cut(s) 435, 873
BtgI CCRYGG 1 cut(s) 110
BtgZI GCGATG 2 cut(s) 611, 953
BtsCI GGATG 5 cut(s) 86, 90, 204, 246, 1165
BtsIMutI CAGTG 3 cut(s) 156, 700, 1038
Cac8I GCNNGC 4 cut(s) 339, 507, 777, 945
Cfr13I GGNCC 1 cut(s) 138
Cfr42I CCGCGG 1 cut(s) 113
ClaI ATCGAT 2 cut(s) 435, 873
CseI GACGC 4 cut(s) 188, 511, 944, 1194
Csp6I GTAC 4 cut(s) 442, 564, 880, 1002
CviAII CATG 2 cut(s) 515, 953
CviQI GTAC 4 cut(s) 442, 564, 880, 1002
DdeI CTNAG 3 cut(s) 157, 717, 1155
DpnI GATC 4 cut(s) 155, 438, 876, 1164
DpnII GATC 4 cut(s) 153, 436, 874, 1162
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 620, 1058
EarI CTCTTC 2 cut(s) 620, 1058
Eco147I AGGCCT 2 cut(s) 449, 887
Eco47I GGWCC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 1168
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 2 cut(s) 518, 956
FalI AAGNNNNNCTT 2 cut(s) 1143, 1175
FaqI GGGAC 2 cut(s) 72, 124
FatI CATG 2 cut(s) 514, 952
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 4 cut(s) 113, 308, 311, 749
FokI GGATG 5 cut(s) 73, 77, 191, 253, 1152
Fsp4HI GCNGC 4 cut(s) 113, 308, 311, 749
FspBI CTAG 3 cut(s) 632, 1040, 1070
GluI GCNGC 4 cut(s) 113, 308, 311, 749
HaeIII GGCC 5 cut(s) 115, 337, 449, 775, 887
HapII CCGG 3 cut(s) 136, 163, 208
HgaI GACGC 4 cut(s) 188, 511, 944, 1194
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 518, 956
HindIII AAGCTT 3 cut(s) 269, 507, 945
HinfI GANTC 3 cut(s) 10, 60, 166
HpaII CCGG 3 cut(s) 136, 163, 208
HphI GGTGA 2 cut(s) 99, 559
Hpy166II GTNNAC 3 cut(s) 564, 1002, 1175
Hpy188I TCNGA 6 cut(s) 95, 415, 472, 720, 853, 910
Hpy188III TCNNGA 2 cut(s) 44, 163
Hpy8I GTNNAC 3 cut(s) 564, 1002, 1175
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 418, 986
HpyCH4III ACNGT 4 cut(s) 577, 695, 1015, 1133
HpyCH4IV ACGT 3 cut(s) 566, 743, 1004
HpyCH4V TGCA 3 cut(s) 319, 757, 943
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 316, 511, 754, 944, 949
HpyF3I CTNAG 3 cut(s) 157, 717, 1155
HpySE526I ACGT 3 cut(s) 566, 743, 1004
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 518, 956
Kpn2I TCCGGA 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 1162
KspI CCGCGG 1 cut(s) 113
Kzo9I GATC 4 cut(s) 153, 436, 874, 1162
LmnI GCTCC 2 cut(s) 46, 982
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 3 cut(s) 588, 930, 1026
MaeI CTAG 3 cut(s) 632, 1040, 1070
MaeII ACGT 3 cut(s) 566, 743, 1004
MalI GATC 4 cut(s) 155, 438, 876, 1164
MboI GATC 4 cut(s) 153, 436, 874, 1162
MboII GAAGA 6 cut(s) 269, 637, 694, 1075, 1132, 1225
MfeI CAATTG 1 cut(s) 1223
MluCI AATT 5 cut(s) 17, 198, 416, 854, 1223
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 2 cut(s) 549, 987
MroI TCCGGA 1 cut(s) 162
MseI TTAA 4 cut(s) 273, 642, 1080, 1239
MslI CAYNNNNRTG 2 cut(s) 209, 1170
MspA1I CMGCKG 2 cut(s) 112, 172
MspI CCGG 3 cut(s) 136, 163, 208
MspR9I CCNGG 3 cut(s) 136, 209, 1170
MunI CAATTG 1 cut(s) 1223
Mva1269I GAATGC 2 cut(s) 296, 734
MvaI CCWGG 1 cut(s) 1170
MvnI CGCG 4 cut(s) 112, 612, 938, 1050
MwoI GCNNNNNNNGC 6 cut(s) 38, 316, 511, 754, 944, 949
NciI CCSGG 2 cut(s) 136, 209
NdeII GATC 4 cut(s) 153, 436, 874, 1162
NlaIII CATG 2 cut(s) 518, 956
NlaIV GGNNCC 2 cut(s) 140, 1230
PceI AGGCCT 2 cut(s) 449, 887
PcsI WCGNNNNNNNCGW 1 cut(s) 1192
PctI GAATGC 2 cut(s) 296, 734
PfeI GAWTC 2 cut(s) 10, 166
PflFI GACNNNGTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 4 cut(s) 114, 309, 312, 750
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 1168
PspGI CCWGG 1 cut(s) 1168
PspN4I GGNNCC 2 cut(s) 140, 1230
PspPI GGNCC 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 4 cut(s) 443, 565, 881, 1003
RsaNI GTAC 4 cut(s) 442, 564, 880, 1002
RseI CAYNNNNRTG 2 cut(s) 209, 1170
SacII CCGCGG 1 cut(s) 113
SaqAI TTAA 4 cut(s) 273, 642, 1080, 1239
SatI GCNGC 4 cut(s) 113, 308, 311, 749
Sau3AI GATC 4 cut(s) 153, 436, 874, 1162
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 136, 209, 1170
SfaNI GCATC 3 cut(s) 588, 930, 1026
SfcI CTRYAG 4 cut(s) 378, 576, 816, 1014
Sfr303I CCGCGG 1 cut(s) 113
SgrBI CCGCGG 1 cut(s) 113
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 209, 1170
Sse9I AATT 5 cut(s) 17, 198, 416, 854, 1223
SseBI AGGCCT 2 cut(s) 449, 887
SsiI CCGC 4 cut(s) 110, 112, 310, 748
SspMI CTAG 3 cut(s) 632, 1040, 1070
StuI AGGCCT 2 cut(s) 449, 887
StyD4I CCNGG 3 cut(s) 134, 207, 1168
TaaI ACNGT 4 cut(s) 577, 695, 1015, 1133
TaiI ACGT 3 cut(s) 569, 746, 1007
TaqI TCGA 7 cut(s) 401, 435, 680, 839, 873, 1118, 1211
TaqII GACCGA 3 cut(s) 234, 419, 857
TasI AATT 5 cut(s) 17, 198, 416, 854, 1223
TatI WGTACW 2 cut(s) 441, 879
TauI GCSGC 3 cut(s) 115, 313, 751
TfiI GAWTC 2 cut(s) 10, 166
Tru1I TTAA 4 cut(s) 273, 642, 1080, 1239
Tru9I TTAA 4 cut(s) 273, 642, 1080, 1239
TscAI CASTG 3 cut(s) 156, 700, 1038
TseI GCWGC 1 cut(s) 307
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 3 cut(s) 156, 700, 1038
Tth111I GACNNNGTC 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 2 cut(s) 416, 854
XspI CTAG 3 cut(s) 632, 1040, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.