Rh1CG022500

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000499
Physical Location & Seq
Reverse (-)
3974870 .. 3975597
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG022500.1

Sequence Viewer

Length: 366 bp
ATGGCTAGCATTTATATCTTAGAGTGGCTGTACCTAGCTGGTGGATCTCCATCTCCATCTCCATCTCCTTCCACTATGTTACCTACTGATGCATACGCATGGGTCCTCTTTGTTGACATATTCCACCTCTCAGTTATGATGATGACTACCACTGGATTTGGAGATTTCGTCTTCACTACTGCATCTGGGAGAGCGTTTGCCATAGTATGGGTTCCTTTCTCTACTATAGTGTTTATGGTTGCGAGTACGTTCTTGGCTCAGACTTTTTTGTTCTATCTTGCACCTATCATTGGAGTTGGAGGATTTGGTTGGGACTGCAGTGACTTCGGCTTCTTTGTTTGCATGTCCAAGTCACATACGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

121

Amino Acids

13.25

Weight (kDa)

4.44

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 36 - 89 8.7e-07 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000499)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02510
fragaria_vesca FvH4_6g16970 FvH4_6g16980 FvH4_7g01220 FvH4_7g01220 FvH4_7g01220 FvH4_7g01240
malus_domestica MD05G1161500.v1.1
pyrus_communis pycom05g15160
rosa_chinensis RchiOBHm_Chr1g0316711 RchiOBHm_Chr1g0316801 RchiOBHm_Chr1g0316871 RchiOBHm_Chr1g0316881 RchiOBHm_Chr1g0316951 RchiOBHm_Chr3g0470991 RchiOBHm_Chr4g0402171
rosa_laevigata RLG00000001679 RLG00000001680 RLG00000007591 RLG00000009108 RLG00000024215 RLG00000024221 RLG00000030636 RLG00000030640 RLG00000030642 RLG00000030648 RLG00000030651 RLG00000030658 RLG00000030667
rosa_multiflora Rmu_sc0000839.1_g000010 Rmu_sc0002667.1_g000003 Rmu_sc0003008.1_g000023 Rmu_sc0003008.1_g000047 Rmu_sc0005604.1_g000001 Rmu_sc0005939.1_g000001 Rmu_sc0006790.1_g000011 Rmu_sc0007472.1_g000004 Rmu_sc0017515.1_g000001 Rmu_sc0019753.1_g000003 Rmu_sc0020172.1_g000001 Rmu_sc0023783.1_g000001
rosa_roxburghii Rroxscaffold_4G00330760 Rroxscaffold_4G00330800 Rroxscaffold_4G00330810 Rroxscaffold_4G00330950
rosa_rugosa Rorug01G0011200 Rorug01G0011500 Rorug01G0011600 Rorug01G0012300 Rorug01G0012300 Rorug01G0012400 Rorug01G0012500 Rorug01G0012600 Rorug01G0012600 Rorug01G0013400 Rorug01G0013400 Rorug01G0013500
rosa_samantha Rh1AG021100 Rh1AG022800 Rh1AG023300 Rh1AG023500 Rh1AG024000 Rh1AG024300 Rh1BG016000 Rh1BG016300 Rh1BG021300 Rh1BG021500 Rh1CG020300 Rh1CG022500 Rh1DG016300 Rh1DG016400 Rh1DG017300 Rh1DG017400 Rh1DG017700 Rh1DG017800 Rh1DG018200 Rh1DG019100 Rh1DG019900 Rh1DG020200 Rh1DG020800 Rh1DG021300 Rh1DG021400 Rh1DG021800 Rh3DG186400
rosa_wichuraiana Rw1G001370 Rw1G001480 Rw1G001650 Rw1G001680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AclWI GGATC 1 cut(s) 52
AfaI GTAC 2 cut(s) 32, 247
AfiI CCNNNNNNNGG 2 cut(s) 207, 290
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 103
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 163
BccI CCATC 3 cut(s) 58, 64, 70
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BfaI CTAG 2 cut(s) 6, 35
BfmI CTRYAG 2 cut(s) 225, 316
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 104, 213
BmsI GCATC 2 cut(s) 79, 191
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 290
Bse1I ACTGG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 207, 290
BseMII CTCAG 2 cut(s) 144, 272
BseNI ACTGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 207, 290
BsmFI GGGAC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 143, 271
BspLI GGNNCC 2 cut(s) 104, 213
BspMAI CTGCAG 1 cut(s) 320
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 19, 130, 258
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 225, 316
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 150, 325
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 31, 246
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 2 cut(s) 99, 343
CviJI RGCY 5 cut(s) 5, 28, 38, 257, 330
CviKI_1 RGCY 5 cut(s) 5, 28, 38, 257, 330
CviQI GTAC 2 cut(s) 31, 246
DdeI CTNAG 3 cut(s) 19, 130, 258
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 94
FaeI CATG 2 cut(s) 102, 346
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 98, 342
FspBI CTAG 2 cut(s) 6, 35
Hin1II CATG 2 cut(s) 102, 346
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 92, 182, 281, 318, 342
HpyF3I CTNAG 3 cut(s) 19, 130, 258
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 2 cut(s) 102, 346
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 24, 138, 171
LweI GCATC 2 cut(s) 79, 191
MaeI CTAG 2 cut(s) 6, 35
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 78, 320, 351
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 163
MflI RGATCY 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 3 cut(s) 116, 137, 293
Mph1103I ATGCAT 1 cut(s) 94
MslI CAYNNNNRTG 1 cut(s) 97
NdeII GATC 1 cut(s) 44
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 102, 346
NlaIV GGNNCC 2 cut(s) 104, 213
NmuCI GTSAC 2 cut(s) 320, 351
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 104, 213
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 32, 247
RsaNI GTAC 2 cut(s) 31, 246
RseI CAYNNNNRTG 1 cut(s) 97
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 103
SetI ASST 6 cut(s) 36, 40, 85, 129, 251, 286
SfaNI GCATC 2 cut(s) 79, 191
SfcI CTRYAG 2 cut(s) 225, 316
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 97
SspMI CTAG 2 cut(s) 6, 35
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 251
TscAI CASTG 2 cut(s) 157, 325
TseFI GTSAC 2 cut(s) 320, 351
Tsp45I GTSAC 2 cut(s) 320, 351
TspRI CASTG 2 cut(s) 157, 325
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 346
XspI CTAG 2 cut(s) 6, 35
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.