Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2314983 .. 2317659

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACGAAGAGGTTTTGAAGCTCAAAGAGAAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCTGACAGAGAAAGAGAGCTGGATGGTCAACGAGAGACTTGTCATGCGGGAAAAAGAAGAAGCAGAAGAAAAGCTCAGAGTTTTTATAGAAGCGACTTCGAGTGCAAGATCTGAATTTGACAAAAAAAGAAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGAGCGTGCATCAGACTTGTGTGAAAAATTCAGAAATCACTGATGATGTAAAACCTGTGCTCCGACTCCACTATGATGCATATGTTGACACACTCAAGACTGACGATGATGACTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGCCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCAAAATTCTTCAACTTCTTTCTAACAAAGAAGGAGTCCAATGGTTCTCGTATCTACAACGCAGATTCTACCAACAAAGATGCTGAGCCTGGGAACAGCCTTTGGAAACGCAAAGCTGATGCTGCTTTCATGCATTGCACGACTATGAAATCATTTTTTGAGGAAACACTAGTAGCAATTCCAGACTTTGTCTTGGATGCACCTGTTGGAGCGCCACCGTCTGGTAGTAATGATCCTTTTGCAAACATACATACTTTGTTGCCTCCACCATACAATTCGAGGGAACAAGAGCTACAATATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

243

Amino Acids

28.03

Weight (kDa)

5.55

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	647
AciI	CCGC	2 cut(s)	112, 417
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	3 cut(s)	179, 256, 431
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	2 cut(s)	19, 439
AhlI	ACTAGT	1 cut(s)	595
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	7 cut(s)	22, 34, 61, 84, 139, 542, 718
AluI	AGCT	7 cut(s)	22, 34, 61, 84, 139, 542, 718
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	94, 212
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	61, 419, 548
ApoI	RAATTY	3 cut(s)	179, 256, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspLEI	GCGC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	48, 406, 535
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	94, 212
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	1 cut(s)	596
BfoI	RGCGCY	1 cut(s)	641
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	3 cut(s)	62, 420, 549
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	63, 421, 550
Bme1390I	CCNGG	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	5 cut(s)	247, 295, 496, 535, 613
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	188, 308
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	213, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse3DI	GCAATG	2 cut(s)	429, 559
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	213, 515
BseGI	GGATG	2 cut(s)	93, 628
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMI	GCAATG	2 cut(s)	429, 559
BseMII	CTCAG	2 cut(s)	154, 501
BseXI	GCAGC	3 cut(s)	48, 406, 535
BshFI	GGCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmAI	GTCTC	2 cut(s)	94, 212
BsnI	GGCC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	173, 658
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	2 cut(s)	112, 417
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	153, 502
BspPI	GGATC	1 cut(s)	653
BspQI	GCTCTTC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	429, 559
BssECI	CCNNGG	2 cut(s)	213, 515
BssMI	GATC	2 cut(s)	173, 658
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	344, 384, 645
Bst6I	CTCTTC	2 cut(s)	3, 224
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	3 cut(s)	140, 510, 729
BstF5I	GGATG	2 cut(s)	93, 628
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	2 cut(s)	176, 661
BstMAI	GTCTC	2 cut(s)	94, 212
BstMBI	GATC	2 cut(s)	173, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	48, 406, 535
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	93, 628
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	640
CviAII	CATG	2 cut(s)	109, 556
DdeI	CTNAG	3 cut(s)	140, 510, 729
DpnI	GATC	2 cut(s)	175, 660
DpnII	GATC	2 cut(s)	173, 658
DraI	TTTAAA	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	3, 224
EarI	CTCTTC	2 cut(s)	3, 224
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	2 cut(s)	310, 561
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	112, 559
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 197, 229
FatI	CATG	2 cut(s)	108, 555
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	62, 420, 549
FokI	GGATG	2 cut(s)	100, 635
Fsp4HI	GCNGC	3 cut(s)	62, 420, 549
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	3 cut(s)	62, 420, 549
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	112, 559
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HincII	GTYRAC	2 cut(s)	94, 316
HindII	GTYRAC	2 cut(s)	94, 316
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	294, 461, 491
Hpy166II	GTNNAC	2 cut(s)	94, 316
Hpy188I	TCNGA	5 cut(s)	143, 178, 243, 262, 293
Hpy188III	TCNNGA	3 cut(s)	67, 325, 608
Hpy8I	GTNNAC	2 cut(s)	94, 316
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	3 cut(s)	344, 384, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	140, 510, 729
Hsp92II	CATG	2 cut(s)	112, 559
HspAI	GCGC	1 cut(s)	638
Kzo9I	GATC	2 cut(s)	173, 658
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	4 cut(s)	58, 69, 294, 635
LpnPI	CCDG	8 cut(s)	70, 80, 297, 501, 528, 621, 633, 642
Lsp1109I	GCAGC	3 cut(s)	48, 406, 535
LweI	GCATC	5 cut(s)	247, 295, 496, 535, 613
MaeI	CTAG	1 cut(s)	596
MalI	GATC	2 cut(s)	175, 660
MboI	GATC	2 cut(s)	173, 658
MboII	GAAGA	6 cut(s)	20, 134, 143, 238, 241, 427
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	6 cut(s)	179, 256, 411, 431, 603, 700
MlyI	GAGTC	2 cut(s)	288, 470
MmeI	TCCRAC	2 cut(s)	316, 613
MnlI	CCTC	5 cut(s)	4, 202, 580, 699, 699
Mph1103I	ATGCAT	2 cut(s)	310, 561
MseI	TTAA	2 cut(s)	353, 402
MslI	CAYNNNNRTG	2 cut(s)	303, 569
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	173, 658
NlaIII	CATG	2 cut(s)	112, 559
NsiI	ATGCAT	2 cut(s)	310, 561
PceI	AGGCCT	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	491
PflFI	GACNNNGTC	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	63, 421, 550
PleI	GAGTC	2 cut(s)	288, 469
PpsI	GAGTC	2 cut(s)	288, 469
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PsrI	GAACNNNNNNTAC	1 cut(s)	702
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	614
RseI	CAYNNNNRTG	2 cut(s)	303, 569
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	353, 402
SatI	GCNGC	3 cut(s)	62, 420, 549
Sau3AI	GATC	2 cut(s)	173, 658
SchI	GAGTC	2 cut(s)	288, 470
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	5 cut(s)	247, 295, 496, 535, 613
SmiMI	CAYNNNNRTG	2 cut(s)	303, 569
SmlI	CTYRAG	2 cut(s)	203, 323
SmoI	CTYRAG	2 cut(s)	203, 323
SpeI	ACTAGT	1 cut(s)	595
Sse9I	AATT	6 cut(s)	179, 256, 411, 431, 603, 700
SseBI	AGGCCT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	112, 417
SspMI	CTAG	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	344, 384, 645
TaqI	TCGA	2 cut(s)	164, 704
TasI	AATT	6 cut(s)	179, 256, 411, 431, 603, 700
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	2 cut(s)	353, 402
Tru9I	TTAA	2 cut(s)	353, 402
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	3 cut(s)	61, 419, 548
TspDTI	ATGAA	2 cut(s)	544, 587
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	614
Van91I	CCANNNNNTGG	1 cut(s)	647
XapI	RAATTY	3 cut(s)	179, 256, 431
XspI	CTAG	1 cut(s)	596
Zsp2I	ATGCAT	2 cut(s)	310, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.