Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003008.1

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

149882 .. 150653

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003008.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgtcaagtgaggcaggcaccatggaggccgaaaaggttttgaagctcaaagagaagctttctgaatgccgactcctaaggaagcagctcttgaaagagagagagttatggaggatcaaggagaggaaaataaaagaactacaagaagaactcagagttgaaatagaagcgaattcgcgtgcgacttctgaatttgaagaaaaaaagaagacactcaaggaggccttgcagcccaagcctcgtcaggtcaagaaggcattggatgaatttaatgctaaccgagatcgtgaattcgcttataagggagcacaaatagccaatgccagtggcaggtttgatagattgcatgctgaattaggaaagaaaattaattggtcagaagcagaagcagagagagattatctggacaagctacagtcagagatagatgagaaatggcatgggacaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.7

Weight (kDa)

8.87

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	17
AccII	CGCG	1 cut(s)	178
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	4 cut(s)	172, 191, 266, 290
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	4 cut(s)	43, 94, 161, 197
AluBI	AGCT	4 cut(s)	46, 58, 88, 412
AluI	AGCT	4 cut(s)	46, 58, 88, 412
Alw21I	GWGCWC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	27, 222
ApeKI	GCWGC	2 cut(s)	85, 229
ApoI	RAATTY	4 cut(s)	172, 191, 266, 290
AseI	ATTAAT	1 cut(s)	369
AxyI	CCTNAGG	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	97, 241
BfmI	CTRYAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	86, 230
BlsI	GCNGC	2 cut(s)	87, 231
BmiI	GGNNCC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	97, 241
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	29, 224
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	29, 224
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	114, 283
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	2 cut(s)	29, 224
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	114, 283
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	417
BstC8I	GCNNGC	3 cut(s)	16, 180, 348
BstDEI	CTNAG	2 cut(s)	77, 152
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	117, 286
BstMBI	GATC	2 cut(s)	114, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 314
BstNSI	RCATGY	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	97, 241
BstV2I	GAAGAC	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	29, 224
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	16, 180, 348
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	3 cut(s)	22, 347, 440
CviJI	RGCY	9 cut(s)	29, 46, 58, 88, 224, 232, 238, 317, 412
CviKI_1	RGCY	9 cut(s)	29, 46, 58, 88, 224, 232, 238, 317, 412
DdeI	CTNAG	2 cut(s)	77, 152
DpnI	GATC	2 cut(s)	116, 285
DpnII	GATC	2 cut(s)	114, 283
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	77
EcoRI	GAATTC	2 cut(s)	172, 290
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	3 cut(s)	25, 350, 443
FaiI	YATR	5 cut(s)	23, 109, 300, 348, 441
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 74, 106, 209, 241
FatI	CATG	3 cut(s)	21, 346, 439
Fnu4HI	GCNGC	2 cut(s)	86, 230
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	86, 230
GluI	GCNGC	2 cut(s)	86, 230
HaeIII	GGCC	2 cut(s)	29, 224
Hin1II	CATG	3 cut(s)	25, 350, 443
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	72
Hpy188I	TCNGA	5 cut(s)	64, 155, 190, 379, 421
Hpy188III	TCNNGA	4 cut(s)	91, 250, 287, 404
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	229, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 314
HpyF3I	CTNAG	2 cut(s)	77, 152
Hsp92II	CATG	3 cut(s)	25, 350, 443
Kzo9I	GATC	2 cut(s)	114, 283
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	4 cut(s)	230, 316, 337, 389
Lsp1109I	GCAGC	2 cut(s)	97, 241
MalI	GATC	2 cut(s)	116, 285
MboI	GATC	2 cut(s)	114, 283
MboII	GAAGA	3 cut(s)	158, 209, 220
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	8 cut(s)	172, 191, 266, 290, 353, 366, 370, 447
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	4, 19, 105, 117, 214, 249
MseI	TTAA	3 cut(s)	270, 369, 451
Mva1269I	GAATGC	1 cut(s)	71
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	235, 314
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	114, 283
NlaIII	CATG	3 cut(s)	25, 350, 443
NlaIV	GGNNCC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	87, 231
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	19
SaqAI	TTAA	3 cut(s)	270, 369, 451
SatI	GCNGC	2 cut(s)	86, 230
Sau3AI	GATC	2 cut(s)	114, 283
SchI	GAGTC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	7 cut(s)	39, 48, 60, 90, 249, 335, 414
SfcI	CTRYAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	8 cut(s)	172, 191, 266, 290, 353, 366, 370, 447
SseBI	AGGCCT	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	417
TasI	AATT	8 cut(s)	172, 191, 266, 290, 353, 366, 370, 447
Tru1I	TTAA	3 cut(s)	270, 369, 451
Tru9I	TTAA	3 cut(s)	270, 369, 451
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	2 cut(s)	85, 229
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	4 cut(s)	172, 191, 266, 290
XceI	RCATGY	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.