Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

1638757 .. 1640651

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCAAGTGAGGCAGCTGGCCCCATGGACGTTGACGAAGAGGTTTTGAAGCTCCAAGAGAAGCTTTGTCAATGCCGACTCGAAAGGGAGCGGCTCTTGCAAGAGAAAAAGAGATGGAGGATCAAGGAGATACTTGTGCAGCGGGGAATAGAGAAAGTAGAAGAAAAACTCAGAGTTGAAATAGAATCGAATTCGGGTGCAACATCTGAATATGAACAAAAAAGGAAGACACTCGAGGAGGCCTTGGAGACCAAGAAGAAGAGTGTACTTAAGCTACGAACCGCTACCAAAGAGTTTTTTGATGATACTGATATGCCTTATATGGAAATGGAAGCAGAACTAGAAAAGGAAAGGGAAGAGTATGGTAGAATGGTTGATGAATACGAATACATAACTGATCGCTTAATAGCACACAGACGTATTGTGCGCAAGCTAGAATCACAGTTACATGAGGAACGGAACAACTTGCTTGCTTTTCTTGAGACTTGTGAGGAAAACTTAAAGATCACTGATGATGTAAAACCTTTGCTCCAAGCCCACTATGATGCATTTATTAACACACTCAAGAGTGATGACGATGATTGGGACTGGTTTATAGAGGAGTTGTATGATGCTCTACAACTGGATTCTGATCACAACAGACATGAGATGTTTCCCAGGGTTGATTTTATATCTCCAGTTTCTGCTGCAATGTCAAAAATTTTAAATTTGTTCAGAAGAAAAAAGACGGAGTCCAGTGGTGCTTTTATATATTACGTAAGTTCTACCGACAAAGATGCTAAGCGTAAACATCCTGTAAGAGGAAGAGAGGACGACAAGTTTGAACATCCTGGCAAGCATCAATATGAAAGAAGATTTGGGAGTTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

34.57

Weight (kDa)

5.36

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	428
AccBSI	CCGCTC	1 cut(s)	91
AciI	CCGC	3 cut(s)	91, 142, 282
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	3 cut(s)	190, 699, 706
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	800
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	49, 179, 824
AjnI	CCWGG	2 cut(s)	656, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	5 cut(s)	17, 52, 64, 274, 433
AluI	AGCT	5 cut(s)	17, 52, 64, 274, 433
Alw26I	GTCTC	2 cut(s)	242, 476
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	19, 240
ApeKI	GCWGC	3 cut(s)	14, 139, 686
ApoI	RAATTY	3 cut(s)	190, 699, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	26, 151, 673
BccI	CCATC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	2 cut(s)	658, 831
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	242, 476
BfaI	CTAG	2 cut(s)	341, 434
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	4 cut(s)	15, 92, 140, 687
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	4 cut(s)	16, 93, 141, 688
Bme1390I	CCNGG	2 cut(s)	658, 831
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	658, 831
BmsI	GCATC	4 cut(s)	535, 601, 766, 847
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	500, 548
BsaAI	YACGTR	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	4 cut(s)	24, 243, 656, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
Bse1I	ACTGG	4 cut(s)	593, 627, 677, 735
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	658, 831
BseDI	CCNNGG	4 cut(s)	24, 243, 656, 657
BseGI	GGATG	2 cut(s)	790, 826
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	4 cut(s)	593, 627, 677, 735
BseRI	GAGGAG	2 cut(s)	251, 614
BseXI	GCAGC	3 cut(s)	26, 151, 673
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	21, 242
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	2 cut(s)	242, 476
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	21, 242
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	120, 397, 504, 631
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	91, 142, 282
BspANI	GGCC	2 cut(s)	21, 242
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	4 cut(s)	593, 627, 677, 735
BssECI	CCNNGG	4 cut(s)	24, 243, 656, 657
BssMI	GATC	4 cut(s)	120, 397, 504, 631
BssT1I	CCWWGG	2 cut(s)	24, 243
Bst2UI	CCWGG	2 cut(s)	658, 831
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	4 cut(s)	33, 254, 351, 799
BstAFI	CTTAAG	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	4 cut(s)	19, 431, 471, 836
BstDEI	CTNAG	2 cut(s)	170, 780
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	798
BstF5I	GGATG	2 cut(s)	790, 826
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	123, 400, 507, 634
BstMAI	GTCTC	2 cut(s)	242, 476
BstMBI	GATC	4 cut(s)	120, 397, 504, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	658, 831
BstSCI	CCNGG	2 cut(s)	656, 829
BstSNI	TACGTA	1 cut(s)	757
BstV1I	GCAGC	3 cut(s)	26, 151, 673
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	21, 242
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	790, 826
BtsIMutI	CAGTG	2 cut(s)	507, 742
Cac8I	GCNNGC	4 cut(s)	19, 431, 471, 836
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	3 cut(s)	25, 449, 644
CviJI	RGCY	9 cut(s)	17, 21, 52, 64, 94, 242, 274, 433, 536
CviKI_1	RGCY	9 cut(s)	17, 21, 52, 64, 94, 242, 274, 433, 536
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	170, 780
DpnI	GATC	4 cut(s)	122, 399, 506, 633
DpnII	GATC	4 cut(s)	120, 397, 504, 631
DraI	TTTAAA	1 cut(s)	705
Eam1104I	CTCTTC	4 cut(s)	33, 254, 351, 799
EarI	CTCTTC	4 cut(s)	33, 254, 351, 799
Eco105I	TACGTA	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	24, 243
Eco147I	AGGCCT	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	798
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	656, 829
EcoT14I	CCWWGG	2 cut(s)	24, 243
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	24, 243
FaeI	CATG	3 cut(s)	28, 452, 647
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	3 cut(s)	24, 448, 643
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	15, 92, 140, 687
FokI	GGATG	2 cut(s)	777, 813
Fsp4HI	GCNGC	4 cut(s)	15, 92, 140, 687
FspBI	CTAG	2 cut(s)	341, 434
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	4 cut(s)	15, 92, 140, 687
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	21, 242
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	28, 452, 647
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	5 cut(s)	78, 185, 437, 626, 731
Hpy166II	GTNNAC	3 cut(s)	34, 266, 788
Hpy188I	TCNGA	4 cut(s)	173, 208, 631, 716
Hpy188III	TCNNGA	2 cut(s)	479, 565
Hpy8I	GTNNAC	3 cut(s)	34, 266, 788
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	3 cut(s)	30, 418, 756
HpyCH4V	TGCA	5 cut(s)	100, 139, 200, 548, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	170, 780
HpySE526I	ACGT	3 cut(s)	30, 418, 756
Hsp92II	CATG	3 cut(s)	28, 452, 647
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	120, 397, 504, 631
LmnI	GCTCC	3 cut(s)	57, 88, 534
Lsp1109I	GCAGC	3 cut(s)	26, 151, 673
LweI	GCATC	4 cut(s)	535, 601, 766, 847
MaeI	CTAG	2 cut(s)	341, 434
MaeII	ACGT	3 cut(s)	30, 418, 756
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	4 cut(s)	122, 399, 506, 633
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	120, 397, 504, 631
MboII	GAAGA	9 cut(s)	50, 173, 238, 268, 271, 368, 729, 816, 864
MluCI	AATT	3 cut(s)	190, 699, 706
MlyI	GAGTC	2 cut(s)	72, 740
Mph1103I	ATGCAT	1 cut(s)	550
MseI	TTAA	5 cut(s)	270, 404, 500, 555, 704
MslI	CAYNNNNRTG	2 cut(s)	543, 843
MspA1I	CMGCKG	2 cut(s)	17, 142
MspCI	CTTAAG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	658, 831
MvaI	CCWGG	2 cut(s)	658, 831
MwoI	GCNNNNNNNGC	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	120, 397, 504, 631
NlaIII	CATG	3 cut(s)	28, 452, 647
NlaIV	GGNNCC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	550
PaeR7I	CTCGAG	1 cut(s)	233
PasI	CCCWGGG	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	185, 437, 626
PflFI	GACNNNGTC	1 cut(s)	730
PkrI	GCNGC	4 cut(s)	16, 93, 141, 688
PleI	GAGTC	2 cut(s)	72, 739
PpsI	GAGTC	2 cut(s)	72, 739
Ppu21I	YACGTR	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	656, 829
PspGI	CCWGG	2 cut(s)	656, 829
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	20
PspXI	VCTCGAGB	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	683
PsyI	GACNNNGTC	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	543, 843
SaqAI	TTAA	5 cut(s)	270, 404, 500, 555, 704
SatI	GCNGC	4 cut(s)	15, 92, 140, 687
Sau3AI	GATC	4 cut(s)	120, 397, 504, 631
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	72, 740
ScrFI	CCNGG	2 cut(s)	658, 831
SfaNI	GCATC	4 cut(s)	535, 601, 766, 847
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	543, 843
SmlI	CTYRAG	4 cut(s)	233, 269, 479, 563
SmoI	CTYRAG	4 cut(s)	233, 269, 479, 563
SnaBI	TACGTA	1 cut(s)	757
Sse9I	AATT	3 cut(s)	190, 699, 706
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	3 cut(s)	91, 142, 282
SspMI	CTAG	2 cut(s)	341, 434
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	656, 829
StyI	CCWWGG	2 cut(s)	24, 243
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	3 cut(s)	33, 421, 759
TaqI	TCGA	3 cut(s)	81, 188, 234
TasI	AATT	3 cut(s)	190, 699, 706
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	3 cut(s)	185, 437, 626
Tru1I	TTAA	5 cut(s)	270, 404, 500, 555, 704
Tru9I	TTAA	5 cut(s)	270, 404, 500, 555, 704
TscAI	CASTG	2 cut(s)	514, 742
TseI	GCWGC	3 cut(s)	14, 139, 686
TspDTI	ATGAA	3 cut(s)	228, 393, 861
TspGWI	ACGGA	2 cut(s)	472, 743
TspRI	CASTG	2 cut(s)	514, 742
Tth111I	GACNNNGTC	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	798
XapI	RAATTY	3 cut(s)	190, 699, 706
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	2 cut(s)	341, 434
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.