Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Forward (+)

4282969 .. 4292777

Gene Structure 9809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCAAGTGAGGCAGGCACCATGGAGGCCGAAAAGGTTTTGAAGCTCAAAGAGAAGCTTTCTGAATGCCGACTCCTAAGGAAGCAGCTCTTGAAAGAGAGAGAGTTATGGAGGATCAAGGAGAGGAAAATAAAAGAACTACAAGAAGAACTCAGAGTTGAAATAGAAGCGAATTCGCGTGCGACTTCTGAATTTGAAGAAAAAAAGAAGACACTCAAGGAGGCCTTGCAGGCCAAGAGGCAGAGTGTGCGTCAGGTCAAGAAGGCATTGGATGAATTTAATGCTAACCGAGATCGTGAATTCGCTTATAAGGGAGCACAAATAGCCAATGCCAGTGGCAGGTTTGATAGATTGCATGCTGAATTAGGAAAGAAAATTAATTGGTCAGAAGCAGAAGCAGAGAGAGATTATCTGGACAAGCTACAGTCAGAGATAGATGAGAAATGGGACAATTTAATTGCTTTTCTTGAGACTTGTCGGAAAAATTCAAAAATCACTGATGATGTGAAGCCTTGCCTCCGAGTCCACTATGATGCATACATTAAAACACTCAAGAGCATGGGCGGATCCAATGTACCCTGTTTGAAGGTATTTCGCTGTACACTGTTTGAAGGTATTTCGCTGGTGAAGTCCGAAGTAGCTTGTGTGAAATATGATAATAGGAACCTTTGTTCAATGTTGCGGTGTTTGGAGCCCAACATAGAGAGTCTGAGAAAGAAAATCTGTGAAATTGAACAGTCCTTATCTGACATGAAGGTTGGTGCTGTGGAATCTATTGTTGTCAATGTTATTAAAGTTCTGAAGACAACAAGTTTAAACACTATGCCTCAGGTAGCGGAAAAGGTACTAGAATTCAAGGAGGAAATAGATGGCCATAATTTGTGGACAAACATCACTAAGGAGAAGGAATCGAGAAAGTTATGTCCATGCACCCCAATAGCTACTGATGGCCTTCTGCACATGAAAATTTCTAACAAAGTTCCACACGAGAAGGTTGATCATATGACACATGAGAAGGTGACAGAATCGGCCGACAAAAAAACTTTGACGGGCTTCAACGACTCAAAGGTCATAGACATATCGGCTGCGTACCTGTATGAGGAAGACTCAAAGTCATGGTTCTTCCCCATTTGTTTTGGGGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

44.04

Weight (kDa)

8.44

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AasI	GACNNNNNNGTC	1 cut(s)	1067
Acc36I	ACCTGC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	17
AccII	CGCG	1 cut(s)	178
AciI	CCGC	3 cut(s)	564, 682, 836
AclWI	GGATC	3 cut(s)	122, 561, 574
AcoI	YGGCCR	2 cut(s)	871, 1029
AcsI	RAATTY	7 cut(s)	172, 191, 275, 299, 484, 851, 966
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	4 cut(s)	576, 601, 846, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	339, 1099
AhdI	GACNNNNNGTC	1 cut(s)	1111
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	6 cut(s)	46, 58, 88, 421, 641, 941
AluI	AGCT	6 cut(s)	46, 58, 88, 421, 641, 941
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	122, 561, 574
AoxI	GGCC	6 cut(s)	27, 222, 231, 871, 949, 1029
ApeKI	GCWGC	2 cut(s)	85, 1085
ApoI	RAATTY	7 cut(s)	172, 191, 275, 299, 484, 851, 966
AseI	ATTAAT	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	637, 1030
AxyI	CCTNAGG	2 cut(s)	77, 828
BalI	TGGCCA	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	696
BauI	CACGAG	1 cut(s)	986
BbsI	GAAGAC	3 cut(s)	215, 809, 1110
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	97, 1072
BccI	CCATC	2 cut(s)	863, 941
BclI	TGATCA	1 cut(s)	997
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	848
BfmI	CTRYAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	86, 1086
BlsI	GCNGC	2 cut(s)	87, 1087
BmeRI	GACNNNNNGTC	1 cut(s)	1111
BmiI	GGNNCC	4 cut(s)	19, 568, 665, 693
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	3 cut(s)	215, 809, 1110
BplI	GAGNNNNNCTC	2 cut(s)	1091, 1123
BpuEI	CTTGAG	3 cut(s)	200, 488, 536
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 1099
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	2 cut(s)	77, 828
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	339, 1099
BseMII	CTCAG	3 cut(s)	166, 701, 842
BseNI	ACTGG	1 cut(s)	333
BseX3I	CGGCCG	1 cut(s)	1029
BseXI	GCAGC	2 cut(s)	97, 1072
BsgI	GTGCAG	1 cut(s)	941
Bsh1236I	CGCG	1 cut(s)	178
Bsh1285I	CGRYCG	1 cut(s)	1032
BshFI	GGCC	6 cut(s)	29, 224, 233, 873, 951, 1031
BshNI	GGYRCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	1032
BsiHKAI	GWGCWC	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	339, 1099
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	6 cut(s)	29, 224, 233, 873, 951, 1031
Bsp1286I	GDGCHC	2 cut(s)	319, 696
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	114, 292, 566, 997
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	564, 682, 836
BspANI	GGCC	6 cut(s)	29, 224, 233, 873, 951, 1031
BspCNI	CTCAG	3 cut(s)	165, 702, 841
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	4 cut(s)	19, 568, 665, 693
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	3 cut(s)	122, 561, 574
BspT107I	GGYRCC	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	114, 292, 566, 997
BssSI	CACGAG	1 cut(s)	986
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	986
Bst4CI	ACNGT	3 cut(s)	426, 606, 738
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	16, 180, 231, 357
BstDEI	CTNAG	5 cut(s)	77, 152, 710, 828, 897
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	1097
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	4 cut(s)	117, 295, 569, 1000
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	4 cut(s)	114, 292, 566, 997
BstMCI	CGRYCG	1 cut(s)	1032
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 247, 323
BstNSI	RCATGY	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	97, 1072
BstV2I	GAAGAC	3 cut(s)	215, 809, 1110
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BstZI	CGGCCG	1 cut(s)	1029
Bsu36I	CCTNAGG	2 cut(s)	77, 828
BsuRI	GGCC	6 cut(s)	29, 224, 233, 873, 951, 1031
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	340, 495, 602
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	16, 180, 231, 357
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	4 cut(s)	575, 600, 845, 1090
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	8 cut(s)	22, 356, 559, 751, 927, 961, 1010, 1116
CviQI	GTAC	4 cut(s)	575, 600, 845, 1090
DdeI	CTNAG	5 cut(s)	77, 152, 710, 828, 897
DpnI	GATC	4 cut(s)	116, 294, 568, 999
DpnII	GATC	4 cut(s)	114, 292, 566, 997
DraI	TTTAAA	1 cut(s)	816
DrdI	GACNNNNNNGTC	1 cut(s)	1067
DriI	GACNNNNNGTC	1 cut(s)	1111
DseDI	GACNNNNNNGTC	1 cut(s)	1067
EaeI	YGGCCR	2 cut(s)	871, 1029
EagI	CGGCCG	1 cut(s)	1029
Eam1105I	GACNNNNNGTC	1 cut(s)	1111
EciI	GGCGGA	1 cut(s)	579
EclXI	CGGCCG	1 cut(s)	1029
Eco130I	CCWWGG	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	696
Eco52I	CGGCCG	1 cut(s)	1029
Eco57I	CTGAAG	1 cut(s)	821
Eco81I	CCTNAGG	2 cut(s)	77, 828
EcoNI	CCTNNNNNAGG	1 cut(s)	1097
EcoRI	GAATTC	3 cut(s)	172, 299, 851
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	8 cut(s)	25, 359, 562, 754, 930, 964, 1013, 1119
FalI	AAGNNNNNCTT	6 cut(s)	42, 74, 74, 106, 209, 241
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	8 cut(s)	21, 355, 558, 750, 926, 960, 1009, 1115
FauNDI	CATATG	1 cut(s)	1002
FbaI	TGATCA	1 cut(s)	997
Fnu4HI	GCNGC	2 cut(s)	86, 1086
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	2 cut(s)	86, 1086
FspBI	CTAG	1 cut(s)	848
GluI	GCNGC	2 cut(s)	86, 1086
HaeIII	GGCC	6 cut(s)	29, 224, 233, 873, 951, 1031
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	8 cut(s)	25, 359, 562, 754, 930, 964, 1013, 1119
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	8 cut(s)	72, 522, 706, 770, 908, 1025, 1061, 1106
HphI	GGTGA	2 cut(s)	637, 1030
Hpy166II	GTNNAC	3 cut(s)	526, 602, 885
Hpy188III	TCNNGA	7 cut(s)	91, 259, 296, 413, 467, 553, 912
Hpy8I	GTNNAC	3 cut(s)	526, 602, 885
HpyAV	CCTTC	8 cut(s)	256, 580, 605, 748, 898, 962, 985, 1009
HpyCH4III	ACNGT	3 cut(s)	426, 606, 738
HpyCH4V	TGCA	5 cut(s)	229, 355, 536, 930, 958
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 247, 323
HpyF3I	CTNAG	5 cut(s)	77, 152, 710, 828, 897
Hsp92II	CATG	8 cut(s)	25, 359, 562, 754, 930, 964, 1013, 1119
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	4 cut(s)	114, 292, 566, 997
LmnI	GCTCC	2 cut(s)	314, 691
LpnPI	CCDG	9 cut(s)	215, 239, 325, 346, 398, 592, 608, 815, 1106
Lsp1109I	GCAGC	2 cut(s)	97, 1072
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	848
MaeIII	GTNAC	1 cut(s)	1018
MalI	GATC	4 cut(s)	116, 294, 568, 999
MboI	GATC	4 cut(s)	114, 292, 566, 997
MboII	GAAGA	6 cut(s)	158, 209, 220, 814, 1114, 1115
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	2 cut(s)	319, 696
MlsI	TGGCCA	1 cut(s)	873
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	5 cut(s)	66, 531, 715, 1055, 1100
MmeI	TCCRAC	1 cut(s)	458
Mox20I	TGGCCA	1 cut(s)	873
Mph1103I	ATGCAT	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	6 cut(s)	279, 378, 455, 543, 792, 815
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	873
MssI	GTTTAAAC	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	71
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	230, 247, 323
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	1002
NdeII	GATC	4 cut(s)	114, 292, 566, 997
NlaIII	CATG	8 cut(s)	25, 359, 562, 754, 930, 964, 1013, 1119
NlaIV	GGNNCC	4 cut(s)	19, 568, 665, 693
NmuCI	GTSAC	1 cut(s)	1018
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	770, 908, 1025
PkrI	GCNGC	2 cut(s)	87, 1087
PleI	GAGTC	5 cut(s)	66, 530, 714, 1055, 1100
PmeI	GTTTAAAC	1 cut(s)	816
PpsI	GAGTC	5 cut(s)	66, 530, 714, 1055, 1100
PshBI	ATTAAT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	19, 568, 665, 693
PsuI	RGATCY	1 cut(s)	566
RsaI	GTAC	4 cut(s)	576, 601, 846, 1091
RsaNI	GTAC	4 cut(s)	575, 600, 845, 1090
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	6 cut(s)	279, 378, 455, 543, 792, 815
SatI	GCNGC	2 cut(s)	86, 1086
Sau3AI	GATC	4 cut(s)	114, 292, 566, 997
SchI	GAGTC	5 cut(s)	66, 531, 715, 1055, 1100
SduI	GDGCHC	2 cut(s)	319, 696
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	422
SfiI	GGCCNNNNNGGCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	3 cut(s)	215, 467, 551
SmoI	CTYRAG	3 cut(s)	215, 467, 551
SphI	GCATGC	1 cut(s)	359
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	3 cut(s)	564, 682, 836
SspMI	CTAG	1 cut(s)	848
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	426, 606, 738
TaqI	TCGA	1 cut(s)	911
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	770, 908, 1025
Tru1I	TTAA	6 cut(s)	279, 378, 455, 543, 792, 815
Tru9I	TTAA	6 cut(s)	279, 378, 455, 543, 792, 815
TscAI	CASTG	3 cut(s)	340, 502, 609
TseFI	GTSAC	1 cut(s)	1018
TseI	GCWGC	2 cut(s)	85, 1085
Tsp45I	GTSAC	1 cut(s)	1018
TspDTI	ATGAA	3 cut(s)	288, 767, 977
TspRI	CASTG	3 cut(s)	340, 502, 609
VspI	ATTAAT	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	1097
XapI	RAATTY	7 cut(s)	172, 191, 275, 299, 484, 851, 966
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	1 cut(s)	848
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.