Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001468

Physical Location & Seq

Genomic Coordinates Reverse (-)

64479566 .. 64500701

Gene Structure 21136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGTCGGCGGCGGAGGAGACAGGCACCATGGACGAAGAGGTTTTGAGGCTCAAAGAGCAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCAGACAGAGAAAGAGAGCTGGATGGCCAAGGAGAGACTTGTCACGCAGGAAAAAGAAGCAGCAGAAGAAAAGCTCAGAGATTTTATAGAAGCGACTTCGAGTGCAAGATCTGAATTTGAAAAAAAAAGAAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGAGCGTGCATCAGCTGCGTAAGGATATCAAAGAGTTTCTTGCTCGTCCTGATGTGAGTTATATGGGAAAACCAACACCCGTCATGGAGAAGTTTGATGGATTGATTGCTGAACTGCGAAAGAAAAAAATGTGCTTACAAGCAGAGACAGATAAGGTGGACAAGCTACATTCAGAGATATTGGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGACGATGTAAAACCTGTGCTCCGACTCCACTATAATGCATATGTTGACACACTCAAGACTGAGGATGATGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCTAAATTCTTCAACTTCTTTCTAACAAAGGAGTCCAACAAAGATGCTGAGAAACAATTCAAACTAATTTTGCAGAAAATAACCAACCTTCAATCTCGGGAGCCCGATTCACGGCCTCGCTTGCGCTTCCCCCACATCGCTACGTTGCTGCCTTGTCAGCTTTCTCAATGCGAACTCCAAAGGGAGCTGCTCCTGACAGAGAAAGAGAGCTGGATGGCCAAGGAGAGACTTGTCATGCGGGAAAAAGAAGCAGCAGAAGAAAAGCTCAGAGCTTTTATAGAAGCGACTTCGAGTGCAAGATCTGAATTTGAAAAAAAAAGAAAGACACTCAAGGAGGCCTTGGAGACCAAGAAGAAGAGCGTGCATCAGTTAAATAAGGCAATCGATGAGTTTCTTGCTCGTCCTGATGTGAATTATATGGGAAAACCAACACCCACCATGGAGAAGTTTGATGGATTGATTGCTGAAATACGAAAGAAAAAAATGTGCTTACAAGCAGAGACAGATAAGGTGGACAAGCTACATTCAGAGATATTGGAGAAACGGGACAATTTATTTTCTTTTCTTAAGACTTGTGTGAAAAATTCAGAAATCACTGATGATGTAAAACCTGTGCTCCGACTCCATTATGATGCATATCTTGACACACTCAAGACTGACGATGATGATTGTGAAATGTTAAGAAAGTATGTGCATTTTATTCTGCAACCGTTTGTCAGGCTTGACTTTAAATCTCCAATTTCCGCTGCAATGTCTAAATTCTTCAACTTCTTTCTAACAAAGGAGTCCAACAAAGATGCTGAGCATAAACATCCTGTAAGAGATGATGACGAGTCTGAACATCGTGTCGAAGCCTCAATAGGAAGGAAGCTTTTGGACTTTATCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

515

Amino Acids

60.43

Weight (kDa)

7.91

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01211 FvH4_7g01230 FvH4_7g01242
rosa_chinensis	RchiOBHm_Chr1g0316481 RchiOBHm_Chr1g0316791 RchiOBHm_Chr1g0316891
rosa_laevigata	RLG00000030638 RLG00000030657 RLG00000030663 RLG00000030666 RLG00000030668 RLG00000030669
rosa_multiflora	Rmu_sc0003008.1_g000045 Rmu_sc0006790.1_g000010 Rmu_sc0007472.1_g000007 Rmu_sc0015213.1_g000015 Rmu_sc0015224.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330780 Rroxscaffold_4G00330960
rosa_rugosa	Rorug01G0011300 Rorug01G0012600 Rorug01G0012600 Rorug01G0012600 Rorug01G0012900 Rorug01G0013000 Rorug01G0013100 Rorug01G0013200.1 Rorug01G0013300 Rorug01G0013400 Rorug01G0013400
rosa_samantha	Rh1AG020700 Rh1AG021000 Rh1AG022900 Rh1AG024100 Rh1AG024400 Rh1BG016100 Rh1BG016400 Rh1CG019900 Rh1CG020700 Rh1CG022400 Rh1CG022700 Rh1DG016100 Rh1DG016500 Rh1DG017500 Rh1DG018300 Rh1DG020600 Rh1DG021500
rosa_wichuraiana	Rw1G001360 Rw1G001380 Rw1G001500 Rw1G001570 Rw1G001660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	5 cut(s)	8, 11, 645, 892, 1398
AcoI	YGGCCR	2 cut(s)	117, 870
AcsI	RAATTY	6 cut(s)	206, 484, 659, 959, 1237, 1412
AfiI	CCNNNNNNNGG	1 cut(s)	765
AflII	CTTAAG	2 cut(s)	467, 1220
AgsI	TTSAA	6 cut(s)	212, 667, 715, 746, 965, 1420
Alw21I	GWGCWC	2 cut(s)	519, 1272
Alw26I	GTCTC	7 cut(s)	11, 121, 239, 395, 874, 992, 1148
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	5 cut(s)	117, 237, 767, 870, 990
ApeKI	GCWGC	9 cut(s)	58, 88, 152, 271, 647, 802, 841, 905, 1400
ApoI	RAATTY	6 cut(s)	206, 484, 659, 959, 1237, 1412
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	780
AvaI	CYCGRG	1 cut(s)	750
BalI	TGGCCA	2 cut(s)	119, 872
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	759
Bbv12I	GWGCWC	2 cut(s)	519, 1272
BbvI	GCAGC	9 cut(s)	70, 75, 164, 258, 634, 789, 828, 917, 1387
BccI	CCATC	4 cut(s)	109, 347, 862, 1100
BceAI	ACGGC	1 cut(s)	782
BcoDI	GTCTC	7 cut(s)	11, 121, 239, 395, 874, 992, 1148
BfrI	CTTAAG	2 cut(s)	467, 1220
BglII	AGATCT	2 cut(s)	200, 953
BlpI	GCTNAGC	1 cut(s)	1455
BmeT110I	CYCGRG	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	25, 756
BmsI	GCATC	5 cut(s)	274, 688, 1027, 1276, 1441
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	1455
BpuEI	CTTGAG	4 cut(s)	215, 536, 968, 1289
Bsa29I	ATCGAT	1 cut(s)	1038
BsaBI	GATNNNNATC	1 cut(s)	1290
BsaI	GGTCTC	2 cut(s)	239, 992
BsaJI	CCNNGG	6 cut(s)	27, 120, 240, 873, 993, 1092
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 1254, 1284
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse3DI	GCAATG	2 cut(s)	657, 1410
Bse8I	GATNNNNATC	1 cut(s)	1290
BseCI	ATCGAT	1 cut(s)	1038
BseDI	CCNNGG	6 cut(s)	27, 120, 240, 873, 993, 1092
BseGI	GGATG	4 cut(s)	120, 568, 873, 1465
BseJI	GATNNNNATC	1 cut(s)	1290
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMI	GCAATG	2 cut(s)	657, 1410
BseMII	CTCAG	5 cut(s)	181, 549, 693, 934, 1446
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	9 cut(s)	70, 75, 164, 258, 634, 789, 828, 917, 1387
BshFI	GGCC	5 cut(s)	119, 239, 769, 872, 992
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	1038
BsiHKAI	GWGCWC	2 cut(s)	519, 1272
BsiHKCI	CYCGRG	1 cut(s)	750
BslFI	GGGAC	2 cut(s)	461, 1214
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	7 cut(s)	11, 121, 239, 395, 874, 992, 1148
BsmFI	GGGAC	2 cut(s)	461, 1214
BsnI	GGCC	5 cut(s)	119, 239, 769, 872, 992
Bso31I	GGTCTC	2 cut(s)	239, 992
BsoBI	CYCGRG	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	519, 759, 1272
Bsp143I	GATC	2 cut(s)	200, 953
Bsp1720I	GCTNAGC	1 cut(s)	1455
Bsp19I	CCATGG	2 cut(s)	27, 1092
BspACI	CCGC	5 cut(s)	8, 11, 645, 892, 1398
BspANI	GGCC	5 cut(s)	119, 239, 769, 872, 992
BspCNI	CTCAG	5 cut(s)	180, 550, 694, 933, 1447
BspDI	ATCGAT	1 cut(s)	1038
BspLI	GGNNCC	2 cut(s)	25, 756
BspQI	GCTCTTC	2 cut(s)	251, 1004
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	2 cut(s)	467, 1220
BspTNI	GGTCTC	2 cut(s)	239, 992
BsrDI	GCAATG	2 cut(s)	657, 1410
BssECI	CCNNGG	6 cut(s)	27, 120, 240, 873, 993, 1092
BssMI	GATC	2 cut(s)	200, 953
BssT1I	CCWWGG	6 cut(s)	27, 120, 240, 873, 993, 1092
Bst4CI	ACNGT	2 cut(s)	612, 1365
Bst6I	CTCTTC	3 cut(s)	30, 251, 1004
BstAFI	CTTAAG	2 cut(s)	467, 1220
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstC8I	GCNNGC	3 cut(s)	263, 776, 1016
BstDEI	CTNAG	5 cut(s)	167, 558, 702, 920, 1455
BstDSI	CCRYGG	2 cut(s)	27, 1092
BstF5I	GGATG	4 cut(s)	120, 568, 873, 1465
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	2 cut(s)	203, 956
BstMAI	GTCTC	7 cut(s)	11, 121, 239, 395, 874, 992, 1148
BstMBI	GATC	2 cut(s)	200, 953
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 271, 775, 811
BstV1I	GCAGC	9 cut(s)	70, 75, 164, 258, 634, 789, 828, 917, 1387
BstX2I	RGATCY	2 cut(s)	200, 953
BstYI	RGATCY	2 cut(s)	200, 953
Bsu15I	ATCGAT	1 cut(s)	1038
BsuRI	GGCC	5 cut(s)	119, 239, 769, 872, 992
BsuTUI	ATCGAT	1 cut(s)	1038
BtgI	CCRYGG	2 cut(s)	27, 1092
BtgZI	GCGATG	1 cut(s)	775
BtsCI	GGATG	4 cut(s)	120, 568, 873, 1465
BtsIMutI	CAGTG	2 cut(s)	495, 1248
Cac8I	GCNNGC	3 cut(s)	263, 776, 1016
CfoI	GCGC	1 cut(s)	780
ClaI	ATCGAT	1 cut(s)	1038
CviAII	CATG	4 cut(s)	28, 340, 889, 1093
DdeI	CTNAG	5 cut(s)	167, 558, 702, 920, 1455
DpnI	GATC	2 cut(s)	202, 955
DpnII	GATC	2 cut(s)	200, 953
DraI	TTTAAA	2 cut(s)	631, 1384
EaeI	YGGCCR	2 cut(s)	117, 870
Eam1104I	CTCTTC	3 cut(s)	30, 251, 1004
EarI	CTCTTC	3 cut(s)	30, 251, 1004
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	6 cut(s)	27, 120, 240, 873, 993, 1092
Eco147I	AGGCCT	2 cut(s)	239, 992
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	2 cut(s)	239, 992
Eco32I	GATATC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	750
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	6 cut(s)	27, 120, 240, 873, 993, 1092
EcoT22I	ATGCAT	2 cut(s)	538, 1291
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	6 cut(s)	27, 120, 240, 873, 993, 1092
FaeI	CATG	4 cut(s)	31, 343, 892, 1096
FalI	AAGNNNNNCTT	8 cut(s)	45, 77, 224, 256, 279, 311, 977, 1009
FaqI	GGGAC	2 cut(s)	461, 1214
FatI	CATG	4 cut(s)	27, 339, 888, 1092
FauI	CCCGC	1 cut(s)	885
FauNDI	CATATG	1 cut(s)	538
FokI	GGATG	4 cut(s)	127, 575, 880, 1452
FriOI	GRGCYC	1 cut(s)	759
GlaI	GCGC	1 cut(s)	779
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	5 cut(s)	119, 239, 769, 872, 992
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	31, 343, 892, 1096
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	1523
HinfI	GANTC	6 cut(s)	522, 686, 761, 1275, 1439, 1487
Hpy166II	GTNNAC	3 cut(s)	415, 544, 1168
Hpy188III	TCNNGA	8 cut(s)	94, 305, 553, 752, 847, 1058, 1295, 1306
Hpy8I	GTNNAC	3 cut(s)	415, 544, 1168
HpyAV	CCTTC	2 cut(s)	752, 1512
HpyCH4III	ACNGT	2 cut(s)	612, 1365
HpyCH4IV	ACGT	1 cut(s)	797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 271, 775, 811
HpyF3I	CTNAG	5 cut(s)	167, 558, 702, 920, 1455
HpySE526I	ACGT	1 cut(s)	797
Hsp92II	CATG	4 cut(s)	31, 343, 892, 1096
HspAI	GCGC	1 cut(s)	778
Kzo9I	GATC	2 cut(s)	200, 953
LguI	GCTCTTC	2 cut(s)	251, 1004
LmnI	GCTCC	7 cut(s)	85, 96, 522, 754, 838, 849, 1275
Lsp1109I	GCAGC	9 cut(s)	70, 75, 164, 258, 634, 789, 828, 917, 1387
LweI	GCATC	5 cut(s)	274, 688, 1027, 1276, 1441
MaeII	ACGT	1 cut(s)	797
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	202, 955
MboI	GATC	2 cut(s)	200, 953
MboII	GAAGA	9 cut(s)	47, 170, 265, 268, 655, 923, 1018, 1021, 1408
MflI	RGATCY	2 cut(s)	200, 953
MhlI	GDGCHC	3 cut(s)	519, 759, 1272
MlsI	TGGCCA	2 cut(s)	119, 872
MluNI	TGGCCA	2 cut(s)	119, 872
MlyI	GAGTC	5 cut(s)	516, 695, 1269, 1448, 1496
MmeI	TCCRAC	4 cut(s)	544, 714, 1297, 1467
MnlI	CCTC	8 cut(s)	7, 31, 39, 229, 553, 780, 982, 1519
Mox20I	TGGCCA	2 cut(s)	119, 872
Mph1103I	ATGCAT	2 cut(s)	538, 1291
MroXI	GAANNNNTTC	1 cut(s)	710
MscI	TGGCCA	2 cut(s)	119, 872
MseI	TTAA	7 cut(s)	468, 581, 630, 1025, 1221, 1334, 1383
MslI	CAYNNNNRTG	2 cut(s)	531, 1284
Msp20I	TGGCCA	2 cut(s)	119, 872
MspA1I	CMGCKG	3 cut(s)	271, 647, 1400
MspCI	CTTAAG	2 cut(s)	467, 1220
MwoI	GCNNNNNNNGC	4 cut(s)	55, 271, 775, 811
NcoI	CCATGG	2 cut(s)	27, 1092
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	200, 953
NlaIII	CATG	4 cut(s)	31, 343, 892, 1096
NlaIV	GGNNCC	2 cut(s)	25, 756
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	2 cut(s)	538, 1291
PceI	AGGCCT	2 cut(s)	239, 992
PciSI	GCTCTTC	2 cut(s)	251, 1004
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	761
PleI	GAGTC	5 cut(s)	516, 694, 1269, 1447, 1495
PpsI	GAGTC	5 cut(s)	516, 694, 1269, 1447, 1495
PspN4I	GGNNCC	2 cut(s)	25, 756
PsuI	RGATCY	2 cut(s)	200, 953
PvuII	CAGCTG	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	531, 1284
SapI	GCTCTTC	2 cut(s)	251, 1004
SaqAI	TTAA	7 cut(s)	468, 581, 630, 1025, 1221, 1334, 1383
Sau3AI	GATC	2 cut(s)	200, 953
SchI	GAGTC	5 cut(s)	516, 695, 1269, 1448, 1496
SduI	GDGCHC	3 cut(s)	519, 759, 1272
SfaNI	GCATC	5 cut(s)	274, 688, 1027, 1276, 1441
SmiMI	CAYNNNNRTG	2 cut(s)	531, 1284
SmlI	CTYRAG	6 cut(s)	230, 467, 551, 983, 1220, 1304
SmoI	CTYRAG	6 cut(s)	230, 467, 551, 983, 1220, 1304
SseBI	AGGCCT	2 cut(s)	239, 992
SsiI	CCGC	5 cut(s)	8, 11, 645, 892, 1398
StuI	AGGCCT	2 cut(s)	239, 992
StyI	CCWWGG	6 cut(s)	27, 120, 240, 873, 993, 1092
TaaI	ACNGT	2 cut(s)	612, 1365
TaiI	ACGT	1 cut(s)	800
TaqI	TCGA	4 cut(s)	191, 944, 1038, 1503
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	7 cut(s)	468, 581, 630, 1025, 1221, 1334, 1383
Tru9I	TTAA	7 cut(s)	468, 581, 630, 1025, 1221, 1334, 1383
TscAI	CASTG	2 cut(s)	502, 1255
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	9 cut(s)	58, 88, 152, 271, 647, 802, 841, 905, 1400
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	2 cut(s)	502, 1255
Vha464I	CTTAAG	2 cut(s)	467, 1220
XapI	RAATTY	6 cut(s)	206, 484, 659, 959, 1237, 1412
XmnI	GAANNNNTTC	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	538, 1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.